Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.7884 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 11 1 NV2.17759 not mapped 1.57 9.6 95.8% feature · violin
Cluster 11 2 NV2.11974 not mapped 1.77 8.5 85.6% feature · violin
Cluster 11 3 XP_001627740.1 (NV2.22180) 1.05 7.8 96.4% feature · violin
Cluster 11 4 NV2.24326 not mapped 0.99 7.8 98.2% feature · violin
Cluster 11 5 XP_001640117.2 (NV2.6876) 1.02 6.6 89.8% feature · violin
Cluster 11 6 NV2.11038 not mapped 0.58 6.5 100.0% feature · violin
Cluster 11 7 NV2.15684 not mapped 0.80 6.4 97.0% feature · violin
Cluster 11 8 XP_048582403.1 (NV2.17125) 1.06 6.3 89.8% feature · violin
Cluster 11 9 NV2.533 not mapped 1.50 6.1 64.7% feature · violin
Cluster 11 10 XP_001641025.1 (NV2.11636) 1.14 6.1 91.0% feature · violin
Cluster 11 11 XP_001641441.1 (NV2.12123) 0.65 6.0 96.4% feature · violin
Cluster 11 12 XP_001629584.1 (NV2.15226) 0.72 5.9 95.2% feature · violin
Cluster 11 13 XP_001626706.1 (NV2.23687) 0.94 5.9 89.2% feature · violin
Cluster 11 14 XP_032218678.1 (NV2.22034) 0.95 5.7 94.0% feature · violin
Cluster 11 15 XP_032221033.1 (NV2.6921) 0.93 5.7 90.4% feature · violin
Cluster 11 16 XP_001632549.1 (NV2.3883) 0.82 5.5 95.2% feature · violin
Cluster 11 17 XP_001642047.1 (NV2.14792) 0.55 5.5 91.6% feature · violin
Cluster 11 18 XP_048584365.1 (NV2.1163) 1.21 5.4 71.3% feature · violin
Cluster 11 19 XP_001632008.1 (NV2.22542) 1.51 5.2 50.3% feature · violin
Cluster 11 20 XP_048576278.1 (NV2.7884) 1.49 5.2 50.3% feature · violin
Cluster 11 21 XP_048576888.1 (NV2.4259) 1.40 5.1 54.5% feature · violin
Cluster 11 22 XP_001628997.1 (NV2.24396) 1.22 5.0 64.1% feature · violin
Cluster 11 23 XP_001630483.1 (NV2.6651) 0.77 5.0 88.6% feature · violin
Cluster 11 24 XP_048576540.1 (NV2.4041) 4.41 5.0 24.0% feature · violin
Cluster 11 25 XP_001636620.2 (NV2.16062) 2.03 4.9 34.1% feature · violin
Cluster 11 26 XP_032242584.2 (NV2.11523) 2.29 4.9 31.1% feature · violin
Cluster 11 27 XP_048589003.1 (NV2.21794) 1.01 4.7 79.6% feature · violin
Cluster 11 28 NV2.13196 not mapped 0.77 4.7 97.0% feature · violin
Cluster 11 29 XP_032240282.2 (NV2.10986) 0.86 4.6 95.2% feature · violin
Cluster 11 30 XP_001639624.2 (NV2.16456) 1.36 4.6 47.9% feature · violin
Cluster 11 31 NV2.24576 not mapped 1.33 4.5 46.7% feature · violin
Cluster 11 32 XP_048585861.1 (NV2.20315) 0.79 4.4 84.4% feature · violin
Cluster 11 33 NV2.21823 not mapped 0.96 4.4 80.2% feature · violin
Cluster 11 34 NV2.4721 not mapped 0.92 4.3 79.6% feature · violin
Cluster 11 35 XP_032243153.1 (NV2.405) 1.08 4.3 74.9% feature · violin
Cluster 11 36 XP_001623639.1 (NV2.5541) 0.56 4.3 96.4% feature · violin
Cluster 11 37 XP_001640452.1 (NV2.7107) 0.53 4.3 95.8% feature · violin
Cluster 11 38 XP_048584521.1 (NV2.18567) 0.44 4.3 95.8% feature · violin
Cluster 11 39 NV2.5844 not mapped 6.26 4.2 19.2% feature · violin
Cluster 11 40 NV2.13027 not mapped 1.06 4.1 58.7% feature · violin
Cluster 11 41 XP_001631910.1 (NV2.17383) 1.36 4.1 38.9% feature · violin
Cluster 11 42 XP_001641859.1 (NV2.3454) 0.65 4.1 89.2% feature · violin
Cluster 11 43 XP_001639626.1 (NV2.16453) 0.54 4.1 94.6% feature · violin
Cluster 11 44 XP_001636882.2 (NV2.11574) 0.58 4.0 97.0% feature · violin
Cluster 11 45 XP_001640327.1 (NV2.7077) 0.56 3.9 91.6% feature · violin
Cluster 11 46 XP_032221862.1 (NV2.20563) 6.21 3.9 18.0% feature · violin
Cluster 11 47 XP_032239984.1 (NV2.7354) 0.84 3.9 86.8% feature · violin
Cluster 11 48 XP_032237044.1 (NV2.5735) 0.45 3.8 96.4% feature · violin
Cluster 11 49 XP_001632041.1 (NV2.22513) 0.91 3.8 61.1% feature · violin
Cluster 11 50 XP_032220058.1 (NV2.25180) 0.53 3.8 94.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 12 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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