Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.9713 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 10 1 NV2.17846 not mapped 8.57 8.4 96.2% feature · violin
Cluster 10 2 XP_001640452.1 (NV2.7107) 0.99 3.9 96.2% feature · violin
Cluster 10 3 XP_048576757.1 (NV2.4713) 2.05 3.7 76.9% feature · violin
Cluster 10 4 NV2.11974 not mapped 1.68 3.4 80.8% feature · violin
Cluster 10 5 NV2.1189 not mapped 1.16 3.1 96.2% feature · violin
Cluster 10 6 NV2.11038 not mapped 0.60 3.0 100.0% feature · violin
Cluster 10 7 XP_001633337.1 (NV2.20247) 1.55 2.9 84.6% feature · violin
Cluster 10 8 NV2.23824 not mapped 1.86 2.9 61.5% feature · violin
Cluster 10 9 NV2.15684 not mapped 0.82 2.8 96.2% feature · violin
Cluster 10 10 XP_001637051.3 (NV2.13087) 2.18 2.8 50.0% feature · violin
Cluster 10 11 XP_048584487.1 (NV2.1171) 2.12 2.7 50.0% feature · violin
Cluster 10 12 XP_032242874.2 (NV2.13117) 2.00 2.7 53.8% feature · violin
Cluster 10 13 NV2.1062 not mapped 1.32 2.7 92.3% feature · violin
Cluster 10 14 XP_001626294.2 (NV2.6419) 1.04 2.7 96.2% feature · violin
Cluster 10 15 NV2.22553 not mapped 1.60 2.7 65.4% feature · violin
Cluster 10 16 XP_032217946.2 (NV2.23410) 1.48 2.6 69.2% feature · violin
Cluster 10 17 XP_032221033.1 (NV2.6921) 1.20 2.6 96.2% feature · violin
Cluster 10 18 XP_001627740.1 (NV2.22180) 0.93 2.5 96.2% feature · violin
Cluster 10 19 XP_001641794.1 (NV2.9713) 1.46 2.5 88.5% feature · violin
Cluster 10 20 XP_032233122.2 (NV2.7410) 1.69 2.4 53.8% feature · violin
Cluster 10 21 NV2.15541 not mapped 1.04 2.4 88.5% feature · violin
Cluster 10 22 NV2.3368 not mapped 2.34 2.4 38.5% feature · violin
Cluster 10 23 XP_048586084.1 (NV2.20180) 1.79 2.4 50.0% feature · violin
Cluster 10 24 NV2.11975 not mapped 1.24 2.4 80.8% feature · violin
Cluster 10 25 NV2.22010 not mapped 1.54 2.3 57.7% feature · violin
Cluster 10 26 XP_001632549.1 (NV2.3883) 0.52 2.3 88.5% feature · violin
Cluster 10 27 XP_001641170.1 (NV2.17856) 0.70 2.3 92.3% feature · violin
Cluster 10 28 XP_001626687.3 (NV2.6473) 1.76 2.3 46.2% feature · violin
Cluster 10 29 XP_048581820.1 (NV2.16725) 1.27 2.3 76.9% feature · violin
Cluster 10 30 XP_048588027.1 (NV2.21848) 2.26 2.2 34.6% feature · violin
Cluster 10 31 XP_001632041.1 (NV2.22513) 1.23 2.2 65.4% feature · violin
Cluster 10 32 XP_001633532.3 (NV2.14141) 1.80 2.2 42.3% feature · violin
Cluster 10 33 NV2.6667 not mapped 1.60 2.2 50.0% feature · violin
Cluster 10 34 NV2.22556 not mapped 1.34 2.1 57.7% feature · violin
Cluster 10 35 XP_001639319.1 (NV2.5129) 1.33 2.1 69.2% feature · violin
Cluster 10 36 XP_032232160.2 (NV2.1782) 1.75 2.1 42.3% feature · violin
Cluster 10 37 XP_032242778.2 (NV2.7985) 1.97 2.1 38.5% feature · violin
Cluster 10 38 XP_048588809.1 (NV2.22403) 1.33 2.1 65.4% feature · violin
Cluster 10 39 XP_032228503.2 (NV2.20721) 1.90 2.1 38.5% feature · violin
Cluster 10 40 XP_032219982.2 (NV2.3019) 1.53 2.1 46.2% feature · violin
Cluster 10 41 XP_001642047.1 (NV2.14792) 0.89 2.1 100.0% feature · violin
Cluster 10 42 XP_001633812.2 (NV2.3189) 1.90 2.1 38.5% feature · violin
Cluster 10 43 XP_001642016.3 (NV2.14858) 2.53 2.1 30.8% feature · violin
Cluster 10 44 XP_048589875.1 (NV2.5969) 2.08 2.1 34.6% feature · violin
Cluster 10 45 XP_001632896.2 (NV2.13504) 1.83 2.0 38.5% feature · violin
Cluster 10 46 XP_001633847.1 (NV2.3097) 0.68 2.0 100.0% feature · violin
Cluster 10 47 XP_001640689.1 (NV2.20404) 1.15 2.0 88.5% feature · violin
Cluster 10 48 XP_001633435.2 (NV2.17004) 1.21 2.0 69.2% feature · violin
Cluster 10 49 NV2.24326 not mapped 0.66 2.0 96.2% feature · violin
Cluster 10 50 NV2.11382 not mapped 1.33 2.0 88.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 16 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP