Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis4614 epidermis2894 gastrodermis_alga_hosting755 gastrodermis_muscle663 neuron_Isl652 neuron_Atoh8628 calicoblast584 gastrodermis_like_2436 neuron_Pou4_2340 gland_2284 neurosecretory_progenitors232 digestive_filaments214 neuron_Pou4_Otp206 neuron_Pou4_1190 germline_oocytes_1182 neuron_Pou4_Gsx162 immune_3142 neuron_Isl_Nkx6136 immune_1126 gland_1_Xbp121 gland_3117 germline_oocytes_273 immune_455 immune_252 cnidocyte38

Showing the cell type that Spis_LOC111325316 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
cnidocyte 1 PFX16419.1 (Spis_XP_022805022_1) 12.37 6.7 63.2% feature · violin
cnidocyte 2 Spis_XP_022803638_1 not mapped 11.17 6.7 63.2% feature · violin
cnidocyte 3 PFX21378.1 (Spis_XP_022797422_1) 10.66 6.4 60.5% feature · violin
cnidocyte 4 PFX15282.1 (Spis_XP_022806650_1) 11.87 6.2 57.9% feature · violin
cnidocyte 5 PFX17333.1 (Spis_XP_022803624_1) 10.84 6.2 57.9% feature · violin
cnidocyte 6 PFX15281.1 (Spis_XP_022806671_1) 10.38 6.2 57.9% feature · violin
cnidocyte 7 PFX21375.1 (Spis_XP_022797425_1) 9.59 6.1 57.9% feature · violin
cnidocyte 8 Spis_XP_022799416_1 not mapped 8.27 6.0 57.9% feature · violin
cnidocyte 9 PFX27986.1 (Spis_XP_022786717_1) 10.71 5.6 52.6% feature · violin
cnidocyte 10 PFX21376.1 (Spis_XP_022797403_1) 9.84 5.6 52.6% feature · violin
cnidocyte 11 PFX27588.1 (Spis_XP_022787371_1) 9.28 5.5 52.6% feature · violin
cnidocyte 12 PFX33204.1 (Spis_XP_022804270_1) 10.73 5.3 50.0% feature · violin
cnidocyte 13 PFX32074.1 (Spis_XP_022779932_1) 10.28 5.3 50.0% feature · violin
cnidocyte 14 PFX27228.1 (Spis_XP_022787985_1) 10.83 5.0 47.4% feature · violin
cnidocyte 15 PFX28212.1 (Spis_XP_022786353_1) 9.37 5.0 47.4% feature · violin
cnidocyte 16 Spis_LOC111325316 not mapped 11.91 4.8 44.7% feature · violin
cnidocyte 17 PFX21383.1 (Spis_XP_022797426_1) 11.54 4.8 44.7% feature · violin
cnidocyte 18 PFX31351.1 (Spis_XP_022781105_1) 4.48 4.7 47.4% feature · violin
cnidocyte 19 PFX32077.1 (Spis_XP_022779882_1) 11.49 4.5 42.1% feature · violin
cnidocyte 20 PFX27774.1 (Spis_XP_022787040_1) 10.66 4.5 42.1% feature · violin
cnidocyte 21 PFX14861.1 (Spis_XP_022807225_1) 9.25 4.5 42.1% feature · violin
cnidocyte 22 PFX11317.1 (Spis_XP_022778392_1) 8.54 4.5 42.1% feature · violin
cnidocyte 23 PFX24146.1 (Spis_XP_022790098_1) 6.35 4.4 42.1% feature · violin
cnidocyte 24 PFX21875.1 (Spis_XP_022796493_1) 7.28 4.4 42.1% feature · violin
cnidocyte 25 PFX17334.1 (Spis_Spis18343_1) 7.59 4.4 42.1% feature · violin
cnidocyte 26 Spis_LOC111323584 not mapped 6.61 4.4 42.1% feature · violin
cnidocyte 27 Spis_orphan_peak_722 not mapped 4.20 4.3 44.7% feature · violin
cnidocyte 28 PFX18870.1 (Spis_XP_022801243_1) 11.52 4.2 39.5% feature · violin
cnidocyte 29 Spis_XP_022789070_1 not mapped 10.40 4.2 39.5% feature · violin
cnidocyte 30 PFX13947.1 (Spis_XP_022808404_1) 9.64 4.2 39.5% feature · violin
cnidocyte 31 PFX24878.1 (Spis_XP_022791835_1) 8.81 4.2 39.5% feature · violin
cnidocyte 32 PFX20040.1 (Spis_XP_022799403_1) 8.69 4.2 39.5% feature · violin
cnidocyte 33 PFX19613.1 (Spis_XP_022800114_1) 10.96 3.9 36.8% feature · violin
cnidocyte 34 PFX30990.1 (Spis_XP_022781764_1) 10.65 3.9 36.8% feature · violin
cnidocyte 35 PFX19339.1 (Spis_XP_022800518_1) 10.49 3.9 36.8% feature · violin
cnidocyte 36 PFX26622.1 (Spis_XP_022788891_1) 9.54 3.9 36.8% feature · violin
cnidocyte 37 PFX18103.1 (Spis_XP_022802488_1) 8.08 3.9 36.8% feature · violin
cnidocyte 38 PFX13565.1 (Spis_XP_022808911_1) 2.84 3.7 44.7% feature · violin
cnidocyte 39 PFX21334.1 (Spis_XP_022797482_1) 1.64 3.7 68.4% feature · violin
cnidocyte 40 PFX17340.1 (Spis_XP_022803634_1) 12.95 3.6 34.2% feature · violin
cnidocyte 41 PFX17341.1 (Spis_XP_022803637_1) 13.09 3.6 34.2% feature · violin
cnidocyte 42 PFX33570.1 (Spis_XP_022798655_1) 10.71 3.6 34.2% feature · violin
cnidocyte 43 PFX34228.1 (Spis_XP_022786994_1) 10.44 3.6 34.2% feature · violin
cnidocyte 44 Spis_XP_022801271_1 not mapped 9.69 3.6 34.2% feature · violin
cnidocyte 45 PFX28319.1 (Spis_XP_022786117_1) 9.09 3.6 34.2% feature · violin
cnidocyte 46 Spis_orphan_peak_14495 not mapped 8.99 3.6 34.2% feature · violin
cnidocyte 47 PFX28187.1 (Spis_XP_022786325_1) 7.98 3.6 34.2% feature · violin
cnidocyte 48 PFX14862.1 (Spis_XP_022807233_1) 4.10 3.6 36.8% feature · violin
cnidocyte 49 PFX15594.1 (Spis_XP_022806261_1) 1.18 3.6 92.1% feature · violin
cnidocyte 50 Spis_XP_022801297_1 not mapped 2.33 3.6 47.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Stylophora pistillata, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 9 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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