Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis4614 epidermis2894 gastrodermis_alga_hosting755 gastrodermis_muscle663 neuron_Isl652 neuron_Atoh8628 calicoblast584 gastrodermis_like_2436 neuron_Pou4_2340 gland_2284 neurosecretory_progenitors232 digestive_filaments214 neuron_Pou4_Otp206 neuron_Pou4_1190 germline_oocytes_1182 neuron_Pou4_Gsx162 immune_3142 neuron_Isl_Nkx6136 immune_1126 gland_1_Xbp121 gland_3117 germline_oocytes_273 immune_455 immune_252 cnidocyte38

Showing the cell type that Spis_Spis2972_1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
germline_oocytes_2 1 Spis_XP_022799427_1 not mapped 12.19 14.8 100.0% feature · violin
germline_oocytes_2 2 PFX32030.1 (Spis_XP_022780033_1) 12.28 14.3 97.3% feature · violin
germline_oocytes_2 3 Spis_orphan_peak_21324 not mapped 7.55 14.3 97.3% feature · violin
germline_oocytes_2 4 PFX20843.1 (Spis_XP_022798226_1) 5.41 14.1 100.0% feature · violin
germline_oocytes_2 5 Spis_orphan_peak_881 not mapped 8.30 13.9 95.9% feature · violin
germline_oocytes_2 6 PFX32250.1 (Spis_XP_022779498_1) 11.67 13.5 91.8% feature · violin
germline_oocytes_2 7 PFX24462.1 (Spis_XP_022792524_1) 13.11 13.3 90.4% feature · violin
germline_oocytes_2 8 PFX17500.1 (Spis_XP_022803401_1) 12.43 13.3 90.4% feature · violin
germline_oocytes_2 9 Spis_XP_022792131_1 not mapped 14.98 12.9 87.7% feature · violin
germline_oocytes_2 10 PFX16916.1 (Spis_XP_022804280_1) 2.50 12.4 98.6% feature · violin
germline_oocytes_2 11 Spis_orphan_peak_10314 not mapped 5.80 12.1 84.9% feature · violin
germline_oocytes_2 12 Spis_LOC111324430 not mapped 4.49 12.0 87.7% feature · violin
germline_oocytes_2 13 PFX14582.1 (Spis_XP_022807598_1) 13.59 11.9 80.8% feature · violin
germline_oocytes_2 14 PFX30756.1 (Spis_XP_022782141_1) 3.94 11.8 90.4% feature · violin
germline_oocytes_2 15 PFX28493.1 (Spis_Spis6782_1) 4.25 11.7 90.4% feature · violin
germline_oocytes_2 16 PFX28484.1 (Spis_XP_022785770_1) 10.00 11.7 79.5% feature · violin
germline_oocytes_2 17 PFX33710.1 (Spis_XP_022796382_1) 4.19 11.7 87.7% feature · violin
germline_oocytes_2 18 Spis_XP_022797896_1 not mapped 3.06 11.6 91.8% feature · violin
germline_oocytes_2 19 PFX18358.1 (Spis_XP_022802092_1) 4.06 11.6 86.3% feature · violin
germline_oocytes_2 20 PFX28111.1 (Spis_XP_022786435_1) 4.04 11.6 91.8% feature · violin
germline_oocytes_2 21 PFX18835.1 (Spis_XP_022801281_1) 11.39 11.5 78.1% feature · violin
germline_oocytes_2 22 PFX30904.1 (Spis_XP_022781901_1) 11.59 11.5 78.1% feature · violin
germline_oocytes_2 23 PFX30501.1 (Spis_XP_022782634_1) 3.75 11.5 87.7% feature · violin
germline_oocytes_2 24 PFX34425.1 (Spis_XP_022784869_1) 3.75 11.5 89.0% feature · violin
germline_oocytes_2 25 PFX28668.1 (Spis_XP_022785627_1) 3.43 11.4 90.4% feature · violin
germline_oocytes_2 26 PFX24453.1 (Spis_XP_022792534_1) 3.60 11.3 87.7% feature · violin
germline_oocytes_2 27 PFX30503.1 (Spis_XP_022782636_1) 3.75 11.3 87.7% feature · violin
germline_oocytes_2 28 PFX31729.1 (Spis_XP_022780522_1) 4.79 11.1 80.8% feature · violin
germline_oocytes_2 29 PFX23162.1 (Spis_XP_022794566_1) 3.31 11.1 91.8% feature · violin
germline_oocytes_2 30 Spis_XP_022803202_1 not mapped 12.36 11.1 75.3% feature · violin
germline_oocytes_2 31 Spis_LOC111334139 not mapped 6.44 11.1 76.7% feature · violin
germline_oocytes_2 32 PFX33979.1 (Spis_XP_022790497_1) 4.43 11.1 82.2% feature · violin
germline_oocytes_2 33 PFX35014.1 (Spis_XP_022810485_1) 4.01 11.0 86.3% feature · violin
germline_oocytes_2 34 PFX29668.1 (Spis_Spis5580_1) 3.83 11.0 84.9% feature · violin
germline_oocytes_2 35 Spis_XP_022801025_1 not mapped 11.50 10.9 74.0% feature · violin
germline_oocytes_2 36 Spis_XP_022777838_1 not mapped 11.49 10.9 74.0% feature · violin
germline_oocytes_2 37 Spis_orphan_peak_2893 not mapped 4.53 10.9 80.8% feature · violin
germline_oocytes_2 38 Spis_LOC111320934 not mapped 3.20 10.8 89.0% feature · violin
germline_oocytes_2 39 PFX32151.1 (Spis_Spis2972_1) 3.65 10.8 86.3% feature · violin
germline_oocytes_2 40 PFX20726.1 (Spis_XP_022798375_1) 3.27 10.7 86.3% feature · violin
germline_oocytes_2 41 PFX26066.1 (Spis_XP_022803007_1) 3.74 10.7 86.3% feature · violin
germline_oocytes_2 42 PFX16496.1 (Spis_XP_022804895_1) 8.67 10.7 72.6% feature · violin
germline_oocytes_2 43 PFX17591.1 (Spis_XP_022803292_1) 4.04 10.6 82.2% feature · violin
germline_oocytes_2 44 PFX34948.1 (Spis_XP_022789919_1) 4.00 10.6 82.2% feature · violin
germline_oocytes_2 45 Spis_orphan_peak_715 not mapped 3.33 10.5 87.7% feature · violin
germline_oocytes_2 46 PFX16872.1 (Spis_XP_022804336_1) 3.53 10.5 86.3% feature · violin
germline_oocytes_2 47 Spis_XP_022784221_1 not mapped 3.90 10.4 80.8% feature · violin
germline_oocytes_2 48 PFX26288.1 (Spis_XP_022789587_1) 2.48 10.3 98.6% feature · violin
germline_oocytes_2 49 Spis_XP_022790356_1 not mapped 3.08 10.2 84.9% feature · violin
germline_oocytes_2 50 Spis_LOC111340335 not mapped 2.54 10.1 89.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Stylophora pistillata, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 17 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP