Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis4614 epidermis2894 gastrodermis_alga_hosting755 gastrodermis_muscle663 neuron_Isl652 neuron_Atoh8628 calicoblast584 gastrodermis_like_2436 neuron_Pou4_2340 gland_2284 neurosecretory_progenitors232 digestive_filaments214 neuron_Pou4_Otp206 neuron_Pou4_1190 germline_oocytes_1182 neuron_Pou4_Gsx162 immune_3142 neuron_Isl_Nkx6136 immune_1126 gland_1_Xbp121 gland_3117 germline_oocytes_273 immune_455 immune_252 cnidocyte38

Showing the cell type that Spis_XP_022780418_1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
digestive_filaments 1 PFX30728.1 (Spis_XP_022782200_1) 0.53 9.9 100.0% feature · violin
digestive_filaments 2 Spis_orphan_peak_10292 not mapped 0.43 9.1 100.0% feature · violin
digestive_filaments 3 PFX29915.1 (Spis_XP_022783421_1) 1.62 8.7 68.2% feature · violin
digestive_filaments 4 Spis_LOC111330312 not mapped 2.25 7.0 43.9% feature · violin
digestive_filaments 5 Spis_XP_022802871_1 not mapped 3.21 6.7 31.8% feature · violin
digestive_filaments 6 Spis_LOC111342924 not mapped 2.08 6.6 41.1% feature · violin
digestive_filaments 7 Spis_orphan_peak_20616 not mapped 0.38 6.6 93.9% feature · violin
digestive_filaments 8 PFX28689.1 (Spis_XP_022785547_1) 7.47 6.2 24.8% feature · violin
digestive_filaments 9 PFX27843.1 (Spis_XP_022786836_1) 0.60 5.8 88.3% feature · violin
digestive_filaments 10 Spis_orphan_peak_19651 not mapped 0.33 5.7 96.7% feature · violin
digestive_filaments 11 Spis_XP_022789462_1 not mapped 1.97 5.6 36.0% feature · violin
digestive_filaments 12 Spis_orphan_peak_10291 not mapped 0.21 5.1 100.0% feature · violin
digestive_filaments 13 Spis_YP_002149701_1 not mapped 0.22 4.7 100.0% feature · violin
digestive_filaments 14 PFX34537.1 (Spis_XP_022783080_1) 0.23 4.7 74.8% feature · violin
digestive_filaments 15 Spis_orphan_peak_1 not mapped 0.22 4.6 100.0% feature · violin
digestive_filaments 16 Spis_XP_022780418_1 not mapped 0.26 4.6 85.0% feature · violin
digestive_filaments 17 PFX23437.1 (Spis_XP_022781364_1) 0.83 4.5 53.3% feature · violin
digestive_filaments 18 PFX29775.1 (Spis_XP_022783669_1) 4.47 4.5 19.2% feature · violin
digestive_filaments 19 Spis_XP_022809737_1 not mapped 0.08 4.3 87.9% feature · violin
digestive_filaments 20 Spis_XP_022803407_1 not mapped 0.14 4.2 79.9% feature · violin
digestive_filaments 21 PFX22292.1 (Spis_XP_022795875_1) 0.20 4.2 85.0% feature · violin
digestive_filaments 22 Spis_LOC111329484 not mapped 3.49 4.0 18.2% feature · violin
digestive_filaments 23 PFX16655.1 (Spis_XP_022804714_1) 0.13 4.0 77.6% feature · violin
digestive_filaments 24 PFX22982.1 (Spis_XP_022794851_1) 0.17 3.9 88.8% feature · violin
digestive_filaments 25 Spis_LOC111334588 not mapped 2.43 3.7 19.6% feature · violin
digestive_filaments 26 PFX16916.1 (Spis_XP_022804280_1) 0.21 3.7 66.8% feature · violin
digestive_filaments 27 PFX34973.1 (Spis_XP_022792045_1) 0.05 3.6 74.3% feature · violin
digestive_filaments 28 PFX27261.1 (Spis_XP_022787831_1) 5.27 3.6 15.0% feature · violin
digestive_filaments 29 Spis_Spis5596_1 not mapped 6.45 3.6 14.5% feature · violin
digestive_filaments 30 PFX16449.1 (Spis_XP_022782245_1) 1.45 3.5 29.0% feature · violin
digestive_filaments 31 PFX33210.1 (Spis_XP_022803372_1) 0.07 3.5 77.6% feature · violin
digestive_filaments 32 PFX22798.1 (Spis_XP_022795138_1) 7.01 3.5 14.0% feature · violin
digestive_filaments 33 Spis_orphan_peak_9058 not mapped 0.19 3.5 94.4% feature · violin
digestive_filaments 34 Spis_orphan_peak_13262 not mapped 0.87 3.3 40.7% feature · violin
digestive_filaments 35 PFX25498.1 (Spis_XP_022790800_1) 0.26 3.3 58.9% feature · violin
digestive_filaments 36 PFX14097.1 (Spis_XP_022808232_1) 0.09 3.2 77.1% feature · violin
digestive_filaments 37 PFX23043.1 (Spis_XP_022794734_1) 0.05 3.1 82.2% feature · violin
digestive_filaments 38 PFX33179.1 (Spis_XP_022803823_1) 0.09 3.1 81.8% feature · violin
digestive_filaments 39 PFX27988.1 (Spis_XP_022786665_1) 0.75 3.1 41.1% feature · violin
digestive_filaments 40 Spis_XP_022806335_1 not mapped 0.08 3.1 75.2% feature · violin
digestive_filaments 41 PFX26075.1 (Spis_XP_022789920_1) 3.36 3.0 14.0% feature · violin
digestive_filaments 42 PFX25901.1 (Spis_XP_022790207_1) 0.22 2.9 56.1% feature · violin
digestive_filaments 43 PFX23892.1 (Spis_XP_022793447_1) 0.03 2.9 80.4% feature · violin
digestive_filaments 44 PFX28752.1 (Spis_XP_022785378_1) 0.05 2.9 79.4% feature · violin
digestive_filaments 45 PFX32349.1 (Spis_XP_022779369_1) 3.88 2.9 12.6% feature · violin
digestive_filaments 46 Spis_orphan_peak_5442 not mapped 0.07 2.9 94.4% feature · violin
digestive_filaments 47 PFX29347.1 (Spis_XP_022784451_1) -0.02 2.8 84.6% feature · violin
digestive_filaments 48 Spis_LOC111336533 not mapped 0.04 2.8 86.0% feature · violin
digestive_filaments 49 Spis_LOC111324957 not mapped 0.15 2.8 66.4% feature · violin
digestive_filaments 50 PFX22333.1 (Spis_XP_022795841_1) 0.10 2.7 87.9% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Stylophora pistillata, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 22 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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