Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis4614 epidermis2894 gastrodermis_alga_hosting755 gastrodermis_muscle663 neuron_Isl652 neuron_Atoh8628 calicoblast584 gastrodermis_like_2436 neuron_Pou4_2340 gland_2284 neurosecretory_progenitors232 digestive_filaments214 neuron_Pou4_Otp206 neuron_Pou4_1190 germline_oocytes_1182 neuron_Pou4_Gsx162 immune_3142 neuron_Isl_Nkx6136 immune_1126 gland_1_Xbp121 gland_3117 germline_oocytes_273 immune_455 immune_252 cnidocyte38

Showing the cell type that Spis_XP_022784015_1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
gastrodermis 1 PFX23310.1 (Spis_XP_022794351_1) 5.44 82.9 97.3% feature · violin
gastrodermis 2 Spis_XP_022786676_1 not mapped 5.49 76.6 94.0% feature · violin
gastrodermis 3 Spis_XP_022793420_1 not mapped 4.43 74.9 95.0% feature · violin
gastrodermis 4 PFX21506.1 (Spis_XP_022797135_1) 4.39 74.1 92.3% feature · violin
gastrodermis 5 PFX27988.1 (Spis_XP_022786665_1) 3.95 66.0 83.2% feature · violin
gastrodermis 6 PFX28798.1 (Spis_XP_022785498_1) 3.63 64.7 85.5% feature · violin
gastrodermis 7 PFX33112.1 (Spis_XP_022807192_1) 5.04 64.7 77.0% feature · violin
gastrodermis 8 PFX32818.1 (Spis_XP_022808863_1) 4.33 62.9 74.4% feature · violin
gastrodermis 9 Spis_XP_022784015_1 not mapped 4.17 61.0 73.1% feature · violin
gastrodermis 10 Spis_XP_022784238_1 not mapped 3.61 60.6 79.6% feature · violin
gastrodermis 11 PFX28884.1 (Spis_XP_022785263_1) 3.42 60.3 82.7% feature · violin
gastrodermis 12 PFX31233.1 (Spis_XP_022781315_1) 3.44 59.3 78.2% feature · violin
gastrodermis 13 PFX30266.1 (Spis_Spis4939_1) 3.31 58.7 81.7% feature · violin
gastrodermis 14 PFX31377.1 (Spis_XP_022781072_1) 3.76 58.0 72.7% feature · violin
gastrodermis 15 Spis_XP_022809885_1 not mapped 3.90 57.8 72.6% feature · violin
gastrodermis 16 Spis_LOC111326479 not mapped 3.08 56.6 82.7% feature · violin
gastrodermis 17 Spis_orphan_peak_17555 not mapped 1.82 56.5 99.1% feature · violin
gastrodermis 18 PFX31442.1 (Spis_XP_022780951_1) 3.63 55.6 69.5% feature · violin
gastrodermis 19 PFX22888.1 (Spis_XP_022795065_1) 2.98 55.1 80.4% feature · violin
gastrodermis 20 PFX24912.1 (Spis_XP_022791794_1) 4.20 54.3 67.1% feature · violin
gastrodermis 21 PFX34309.1 (Spis_XP_022777939_1) 3.84 53.8 65.7% feature · violin
gastrodermis 22 Spis_XP_022807230_1 not mapped 3.08 52.2 83.9% feature · violin
gastrodermis 23 PFX25335.1 (Spis_XP_022791079_1) 2.86 51.7 77.2% feature · violin
gastrodermis 24 PFX23038.1 (Spis_XP_022794736_1) 3.29 51.6 67.7% feature · violin
gastrodermis 25 Spis_orphan_peak_4023 not mapped 3.91 51.1 61.8% feature · violin
gastrodermis 26 Spis_LOC111321177 not mapped 2.68 51.1 83.4% feature · violin
gastrodermis 27 PFX34451.1 (Spis_XP_022785526_1) 2.87 50.6 75.4% feature · violin
gastrodermis 28 PFX30772.1 (Spis_XP_022782128_1) 2.80 50.3 76.1% feature · violin
gastrodermis 29 Spis_LOC111325950 not mapped 2.80 50.1 81.5% feature · violin
gastrodermis 30 PFX27352.1 (Spis_XP_022787700_1) 3.48 48.0 59.8% feature · violin
gastrodermis 31 Spis_XP_022779335_1 not mapped 3.11 47.7 63.2% feature · violin
gastrodermis 32 Spis_XP_022796887_1 not mapped 2.43 47.6 87.0% feature · violin
gastrodermis 33 PFX20019.1 (Spis_XP_022799422_1) 3.55 47.5 58.5% feature · violin
gastrodermis 34 PFX13598.1 (Spis_XP_022808870_1) 3.98 47.3 55.8% feature · violin
gastrodermis 35 PFX34434.1 (Spis_XP_022783839_1) 3.57 47.2 58.0% feature · violin
gastrodermis 36 Spis_orphan_peak_16980 not mapped 3.51 47.2 58.1% feature · violin
gastrodermis 37 PFX15525.1 (Spis_XP_022806356_1) 3.68 46.9 56.8% feature · violin
gastrodermis 38 PFX11653.1 (Spis_XP_022777933_1) 2.07 46.8 96.4% feature · violin
gastrodermis 39 PFX29888.1 (Spis_XP_022783518_1) 3.48 46.8 58.4% feature · violin
gastrodermis 40 PFX15533.1 (Spis_XP_022806376_1) 3.72 46.2 55.7% feature · violin
gastrodermis 41 PFX29577.1 (Spis_XP_022784036_1) 3.89 46.1 54.4% feature · violin
gastrodermis 42 PFX17237.1 (Spis_XP_022803796_1) 3.71 43.8 52.5% feature · violin
gastrodermis 43 PFX27833.1 (Spis_XP_022786917_1) 2.30 43.5 69.0% feature · violin
gastrodermis 44 Spis_orphan_peak_21298 not mapped 4.11 42.2 48.7% feature · violin
gastrodermis 45 PFX33192.1 (Spis_Spis1922_1) 3.46 41.7 54.4% feature · violin
gastrodermis 46 PFX16149.1 (Spis_XP_022805407_1) 3.40 41.5 51.1% feature · violin
gastrodermis 47 PFX28912.1 (Spis_XP_022785129_1) 3.77 41.4 49.8% feature · violin
gastrodermis 48 Spis_XP_022803549_1 not mapped 2.93 41.1 54.5% feature · violin
gastrodermis 49 PFX34286.1 (Spis_XP_022787830_1) 3.54 40.9 49.6% feature · violin
gastrodermis 50 Spis_LOC111345167 not mapped 2.32 40.7 68.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Stylophora pistillata, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 17 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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