Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis4614 epidermis2894 gastrodermis_alga_hosting755 gastrodermis_muscle663 neuron_Isl652 neuron_Atoh8628 calicoblast584 gastrodermis_like_2436 neuron_Pou4_2340 gland_2284 neurosecretory_progenitors232 digestive_filaments214 neuron_Pou4_Otp206 neuron_Pou4_1190 germline_oocytes_1182 neuron_Pou4_Gsx162 immune_3142 neuron_Isl_Nkx6136 immune_1126 gland_1_Xbp121 gland_3117 germline_oocytes_273 immune_455 immune_252 cnidocyte38

Showing the cell type that Spis_XP_022785729_1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
germline_oocytes_1 1 PFX20843.1 (Spis_XP_022798226_1) 5.83 22.6 99.5% feature · violin
germline_oocytes_1 2 PFX20185.1 (Spis_XP_022799214_1) 9.81 20.0 86.3% feature · violin
germline_oocytes_1 3 PFX14724.1 (Spis_XP_022807389_1) 10.83 19.3 83.5% feature · violin
germline_oocytes_1 4 Spis_XP_022779358_1 not mapped 11.06 19.0 81.9% feature · violin
germline_oocytes_1 5 PFX32245.1 (Spis_XP_022779499_1) 3.38 18.8 97.3% feature · violin
germline_oocytes_1 6 PFX31740.1 (Spis_XP_022780477_1) 4.31 18.7 90.7% feature · violin
germline_oocytes_1 7 Spis_orphan_peak_17744 not mapped 5.35 18.1 83.5% feature · violin
germline_oocytes_1 8 PFX21452.1 (Spis_XP_022797268_1) 5.01 17.7 83.0% feature · violin
germline_oocytes_1 9 PFX25026.1 (Spis_XP_022791661_1) 2.93 17.6 96.2% feature · violin
germline_oocytes_1 10 PFX29064.1 (Spis_XP_022785027_1) 5.42 17.5 80.8% feature · violin
germline_oocytes_1 11 Spis_XP_022801363_1 not mapped 6.46 16.5 74.2% feature · violin
germline_oocytes_1 12 PFX16982.1 (Spis_XP_022804192_1) 9.95 16.4 70.9% feature · violin
germline_oocytes_1 13 PFX21632.1 (Spis_XP_022792395_1) 7.91 16.1 70.3% feature · violin
germline_oocytes_1 14 Spis_XP_022790466_1 not mapped 9.87 16.0 69.2% feature · violin
germline_oocytes_1 15 PFX34191.1 (Spis_XP_022789122_1) 6.40 15.5 68.7% feature · violin
germline_oocytes_1 16 PFX29521.1 (Spis_XP_022792399_1) 7.83 15.4 67.0% feature · violin
germline_oocytes_1 17 PFX17035.1 (Spis_XP_022801108_1) 4.90 15.3 73.1% feature · violin
germline_oocytes_1 18 PFX19558.1 (Spis_XP_022800191_1) 8.82 14.6 63.7% feature · violin
germline_oocytes_1 19 PFX30647.1 (Spis_XP_022782393_1) 4.67 14.5 71.4% feature · violin
germline_oocytes_1 20 Spis_XP_022792397_1 not mapped 6.37 14.2 62.6% feature · violin
germline_oocytes_1 21 Spis_XP_022792426_1 not mapped 7.19 14.1 61.5% feature · violin
germline_oocytes_1 22 PFX20389.1 (Spis_XP_022798875_1) 4.20 14.0 67.0% feature · violin
germline_oocytes_1 23 PFX24736.1 (Spis_Spis10645_1) 4.12 13.7 68.1% feature · violin
germline_oocytes_1 24 Spis_XP_022785402_1 not mapped 1.70 13.6 96.2% feature · violin
germline_oocytes_1 25 Spis_LOC111340505 not mapped 1.83 13.1 96.7% feature · violin
germline_oocytes_1 26 PFX23687.1 (Spis_XP_022793831_1) 2.99 12.9 81.3% feature · violin
germline_oocytes_1 27 Spis_LOC111330312 not mapped 3.56 12.9 73.1% feature · violin
germline_oocytes_1 28 PFX28574.1 (Spis_XP_022785729_1) 1.42 12.8 99.5% feature · violin
germline_oocytes_1 29 Spis_XP_022795472_1 not mapped 1.31 12.7 97.8% feature · violin
germline_oocytes_1 30 PFX34849.1 (Spis_XP_022808495_1) 5.97 12.6 56.0% feature · violin
germline_oocytes_1 31 PFX28984.1 (Spis_XP_022785063_1) 3.01 12.4 75.8% feature · violin
germline_oocytes_1 32 PFX15239.1 (Spis_XP_022795211_1) 7.46 12.3 53.8% feature · violin
germline_oocytes_1 33 Spis_LOC111330204 not mapped 4.71 12.2 56.6% feature · violin
germline_oocytes_1 34 PFX25614.1 (Spis_XP_022790645_1) 3.21 12.0 62.6% feature · violin
germline_oocytes_1 35 PFX30933.1 (Spis_XP_022781899_1) 7.40 11.7 51.1% feature · violin
germline_oocytes_1 36 PFX34768.1 (Spis_XP_022780022_1) 3.34 11.5 59.3% feature · violin
germline_oocytes_1 37 PFX26817.1 (Spis_XP_022788653_1) 1.10 11.4 98.4% feature · violin
germline_oocytes_1 38 PFX20496.1 (Spis_XP_022798688_1) 6.98 11.2 48.9% feature · violin
germline_oocytes_1 39 Spis_LOC111331540 not mapped 5.50 11.1 50.0% feature · violin
germline_oocytes_1 40 PFX34973.1 (Spis_XP_022792045_1) 1.27 11.0 98.4% feature · violin
germline_oocytes_1 41 Spis_XP_022803407_1 not mapped 1.17 10.8 98.9% feature · violin
germline_oocytes_1 42 PFX27935.1 (Spis_XP_022786749_1) 6.34 10.7 47.3% feature · violin
germline_oocytes_1 43 PFX29850.1 (Spis_XP_022783583_1) 2.05 10.6 74.2% feature · violin
germline_oocytes_1 44 PFX17041.1 (Spis_XP_022804104_1) 3.55 10.6 53.8% feature · violin
germline_oocytes_1 45 PFX31400.1 (Spis_XP_022781043_1) 3.20 10.5 57.7% feature · violin
germline_oocytes_1 46 PFX24635.1 (Spis_XP_022792220_1) 7.14 10.5 45.6% feature · violin
germline_oocytes_1 47 PFX26943.1 (Spis_XP_022788440_1) 1.24 10.4 97.3% feature · violin
germline_oocytes_1 48 PFX25609.1 (Spis_XP_022790668_1) 0.96 10.4 98.4% feature · violin
germline_oocytes_1 49 PFX22982.1 (Spis_XP_022794851_1) 0.94 10.3 98.4% feature · violin
germline_oocytes_1 50 PFX16354.1 (Spis_XP_022805145_1) 1.09 10.2 100.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Stylophora pistillata, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 13 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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