Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis4614 epidermis2894 gastrodermis_alga_hosting755 gastrodermis_muscle663 neuron_Isl652 neuron_Atoh8628 calicoblast584 gastrodermis_like_2436 neuron_Pou4_2340 gland_2284 neurosecretory_progenitors232 digestive_filaments214 neuron_Pou4_Otp206 neuron_Pou4_1190 germline_oocytes_1182 neuron_Pou4_Gsx162 immune_3142 neuron_Isl_Nkx6136 immune_1126 gland_1_Xbp121 gland_3117 germline_oocytes_273 immune_455 immune_252 cnidocyte38

Showing the cell type that Spis_XP_022787513_1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
immune_2 1 Spis_LOC111345711 not mapped 11.99 12.4 100.0% feature · violin
immune_2 2 PFX23640.1 (Spis_XP_022793850_1) 11.89 12.4 100.0% feature · violin
immune_2 3 PFX32589.1 (Spis_XP_022779048_1) 10.22 12.4 100.0% feature · violin
immune_2 4 PFX18980.1 (Spis_XP_022801064_1) 9.34 12.3 100.0% feature · violin
immune_2 5 PFX17793.1 (Spis_XP_022802936_1) 12.42 12.2 98.1% feature · violin
immune_2 6 PFX15285.1 (Spis_Spis20505_1) 9.63 12.1 98.1% feature · violin
immune_2 7 PFX22888.1 (Spis_XP_022795065_1) 5.36 11.9 98.1% feature · violin
immune_2 8 PFX15741.1 (Spis_XP_022806069_1) 5.41 11.8 100.0% feature · violin
immune_2 9 Spis_orphan_peak_11821 not mapped 12.22 11.7 94.2% feature · violin
immune_2 10 PFX33261.1 (Spis_XP_022798553_1) 11.05 11.7 94.2% feature · violin
immune_2 11 Spis_XP_022793834_1 not mapped 9.06 11.7 94.2% feature · violin
immune_2 12 Spis_orphan_peak_6120 not mapped 10.99 11.3 90.4% feature · violin
immune_2 13 PFX27061.1 (Spis_XP_022788213_1) 8.20 11.2 90.4% feature · violin
immune_2 14 PFX30863.1 (Spis_XP_022781957_1) 4.48 11.1 96.2% feature · violin
immune_2 15 PFX27457.1 (Spis_XP_022787513_1) 11.72 11.0 88.5% feature · violin
immune_2 16 Spis_LOC111319160 not mapped 10.81 11.0 88.5% feature · violin
immune_2 17 PFX15845.1 (Spis_XP_022805878_1) 5.11 11.0 94.2% feature · violin
immune_2 18 PFX29860.1 (Spis_XP_022783628_1) 8.93 10.9 88.5% feature · violin
immune_2 19 PFX14950.1 (Spis_XP_022807111_1) 5.72 10.8 90.4% feature · violin
immune_2 20 PFX23914.1 (Spis_XP_022793409_1) 7.01 10.7 88.5% feature · violin
immune_2 21 PFX31135.1 (Spis_XP_022781475_1) 3.90 10.7 96.2% feature · violin
immune_2 22 PFX34366.1 (Spis_Spis21300_1) 8.04 10.6 86.5% feature · violin
immune_2 23 PFX30483.1 (Spis_XP_022782516_1) 8.25 10.4 84.6% feature · violin
immune_2 24 PFX16306.1 (Spis_XP_022805190_1) 3.39 10.4 100.0% feature · violin
immune_2 25 PFX25711.1 (Spis_XP_022790465_1) 4.45 10.4 92.3% feature · violin
immune_2 26 Spis_XP_022809957_1 not mapped 6.40 10.3 86.5% feature · violin
immune_2 27 PFX23379.1 (Spis_XP_022794272_1) 4.98 10.3 88.5% feature · violin
immune_2 28 Spis_XP_022778233_1 not mapped 10.27 10.3 82.7% feature · violin
immune_2 29 PFX24392.1 (Spis_XP_022792639_1) 8.43 10.2 82.7% feature · violin
immune_2 30 PFX28679.1 (Spis_Spis6626_1) 6.40 10.2 84.6% feature · violin
immune_2 31 PFX22281.1 (Spis_XP_022795914_1) 5.24 10.1 86.5% feature · violin
immune_2 32 PFX15112.1 (Spis_XP_022806885_1) 6.51 10.0 82.7% feature · violin
immune_2 33 PFX21708.1 (Spis_XP_022796771_1) 6.55 10.0 82.7% feature · violin
immune_2 34 PFX11653.1 (Spis_XP_022777933_1) 2.73 10.0 98.1% feature · violin
immune_2 35 PFX30239.1 (Spis_Spis25882_1) 6.46 10.0 82.7% feature · violin
immune_2 36 PFX34451.1 (Spis_XP_022785526_1) 3.84 10.0 94.2% feature · violin
immune_2 37 Spis_orphan_peak_17555 not mapped 2.15 10.0 98.1% feature · violin
immune_2 38 PFX30211.1 (Spis_XP_022783128_1) 7.85 9.9 80.8% feature · violin
immune_2 39 PFX20403.1 (Spis_XP_022798828_1) 6.08 9.8 80.8% feature · violin
immune_2 40 Spis_LOC111343750 not mapped 8.18 9.7 78.8% feature · violin
immune_2 41 PFX17827.1 (Spis_XP_022802904_1) 6.07 9.7 80.8% feature · violin
immune_2 42 PFX31667.1 (Spis_XP_022780605_1) 3.38 9.7 94.2% feature · violin
immune_2 43 PFX32502.1 (Spis_XP_022779194_1) 5.43 9.6 80.8% feature · violin
immune_2 44 PFX24982.1 (Spis_XP_022791712_1) 6.81 9.6 78.8% feature · violin
immune_2 45 PFX20302.1 (Spis_XP_022799019_1) 3.13 9.6 92.3% feature · violin
immune_2 46 PFX32635.1 (Spis_XP_022778684_1) 4.93 9.5 82.7% feature · violin
immune_2 47 PFX27461.1 (Spis_XP_022787517_1) 8.38 9.5 76.9% feature · violin
immune_2 48 PFX21782.1 (Spis_XP_022796612_1) 4.00 9.5 88.5% feature · violin
immune_2 49 Spis_orphan_peak_6121 not mapped 2.75 9.5 100.0% feature · violin
immune_2 50 PFX19527.1 (Spis_XP_022800233_1) 2.87 9.4 98.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Stylophora pistillata, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 10 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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