Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis4614 epidermis2894 gastrodermis_alga_hosting755 gastrodermis_muscle663 neuron_Isl652 neuron_Atoh8628 calicoblast584 gastrodermis_like_2436 neuron_Pou4_2340 gland_2284 neurosecretory_progenitors232 digestive_filaments214 neuron_Pou4_Otp206 neuron_Pou4_1190 germline_oocytes_1182 neuron_Pou4_Gsx162 immune_3142 neuron_Isl_Nkx6136 immune_1126 gland_1_Xbp121 gland_3117 germline_oocytes_273 immune_455 immune_252 cnidocyte38

Showing the cell type that Spis_XP_022797588_1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
neuron_Atoh8 1 Spis_LOC111340631 not mapped 9.61 41.7 98.6% feature · violin
neuron_Atoh8 2 PFX21279.1 (Spis_XP_022797588_1) 9.80 41.7 98.7% feature · violin
neuron_Atoh8 3 Spis_orphan_peak_6263 not mapped 10.38 41.6 98.4% feature · violin
neuron_Atoh8 4 Spis_orphan_peak_6262 not mapped 10.36 40.4 95.5% feature · violin
neuron_Atoh8 5 Spis_LOC111319535 not mapped 8.29 40.3 97.5% feature · violin
neuron_Atoh8 6 PFX17626.1 (Spis_XP_022803240_1) 7.54 40.3 96.2% feature · violin
neuron_Atoh8 7 Spis_orphan_peak_6272 not mapped 9.58 40.2 95.4% feature · violin
neuron_Atoh8 8 Spis_XP_022796479_1 not mapped 9.27 38.5 91.2% feature · violin
neuron_Atoh8 9 PFX19649.1 (Spis_XP_022777736_1) 5.95 37.9 93.6% feature · violin
neuron_Atoh8 10 PFX26795.1 (Spis_XP_022788581_1) 3.53 37.2 99.4% feature · violin
neuron_Atoh8 11 Spis_orphan_peak_6252 not mapped 9.35 36.7 86.9% feature · violin
neuron_Atoh8 12 PFX27893.1 (Spis_XP_022786760_1) 5.58 36.5 89.8% feature · violin
neuron_Atoh8 13 Spis_orphan_peak_6276 not mapped 9.33 36.5 86.5% feature · violin
neuron_Atoh8 14 Spis_orphan_peak_2705 not mapped 7.63 35.5 85.0% feature · violin
neuron_Atoh8 15 PFX13220.1 (Spis_XP_022809335_1) 9.08 35.1 83.3% feature · violin
neuron_Atoh8 16 Spis_orphan_peak_6258 not mapped 9.02 35.1 83.3% feature · violin
neuron_Atoh8 17 Spis_orphan_peak_13055 not mapped 5.67 34.9 88.5% feature · violin
neuron_Atoh8 18 PFX27285.1 (Spis_XP_022787902_1) 8.29 34.5 82.2% feature · violin
neuron_Atoh8 19 Spis_XP_022805441_1 not mapped 4.58 33.9 87.7% feature · violin
neuron_Atoh8 20 Spis_orphan_peak_6264 not mapped 8.85 33.4 79.3% feature · violin
neuron_Atoh8 21 PFX19843.1 (Spis_XP_022799768_1) 6.89 33.4 81.1% feature · violin
neuron_Atoh8 22 Spis_orphan_peak_3584 not mapped 6.69 33.3 80.3% feature · violin
neuron_Atoh8 23 Spis_LOC111332032 not mapped 5.95 32.9 82.3% feature · violin
neuron_Atoh8 24 Spis_LOC111321177 not mapped 3.36 31.8 94.4% feature · violin
neuron_Atoh8 25 Spis_XP_022796887_1 not mapped 3.19 31.7 97.1% feature · violin
neuron_Atoh8 26 PFX29901.1 (Spis_XP_022783578_1) 10.49 31.6 74.5% feature · violin
neuron_Atoh8 27 Spis_LOC111328308 not mapped 8.47 31.5 75.5% feature · violin
neuron_Atoh8 28 Spis_XP_022804706_1 not mapped 9.89 30.9 73.1% feature · violin
neuron_Atoh8 29 PFX15858.1 (Spis_XP_022805863_1) 10.46 30.7 72.5% feature · violin
neuron_Atoh8 30 PFX18442.1 (Spis_XP_022801955_1) 9.61 29.8 70.4% feature · violin
neuron_Atoh8 31 Spis_LOC111328309 not mapped 9.19 29.2 69.1% feature · violin
neuron_Atoh8 32 PFX13493.1 (Spis_XP_022809186_1) 10.30 28.7 67.8% feature · violin
neuron_Atoh8 33 Spis_LOC111322911 not mapped 9.13 28.3 67.0% feature · violin
neuron_Atoh8 34 Spis_orphan_peak_16459 not mapped 7.10 28.3 67.8% feature · violin
neuron_Atoh8 35 Spis_XP_022788474_1 not mapped 7.77 28.3 68.0% feature · violin
neuron_Atoh8 36 PFX28304.1 (Spis_XP_022786197_1) 4.72 28.1 73.6% feature · violin
neuron_Atoh8 37 Spis_orphan_peak_1174 not mapped 4.47 27.9 74.2% feature · violin
neuron_Atoh8 38 PFX30653.1 (Spis_XP_022782360_1) 5.29 27.5 69.3% feature · violin
neuron_Atoh8 39 PFX32880.1 (Spis_XP_022809985_1) 5.38 27.3 68.3% feature · violin
neuron_Atoh8 40 PFX23011.1 (Spis_XP_022794830_1) 4.51 27.1 71.8% feature · violin
neuron_Atoh8 41 PFX24657.1 (Spis_XP_022792148_1) 5.20 26.3 66.2% feature · violin
neuron_Atoh8 42 Spis_LOC111328343 not mapped 8.23 25.9 61.6% feature · violin
neuron_Atoh8 43 Spis_LOC111330475 not mapped 7.33 25.3 66.7% feature · violin
neuron_Atoh8 44 PFX16451.1 (Spis_XP_022806543_1) 5.66 25.2 61.8% feature · violin
neuron_Atoh8 45 PFX25775.1 (Spis_XP_022790401_1) 8.18 24.9 59.1% feature · violin
neuron_Atoh8 46 PFX26447.1 (Spis_XP_022789260_1) 9.79 24.7 58.3% feature · violin
neuron_Atoh8 47 PFX12905.1 (Spis_XP_022809671_1) 7.53 24.6 58.6% feature · violin
neuron_Atoh8 48 Spis_XP_022794056_1 not mapped 4.81 24.6 63.1% feature · violin
neuron_Atoh8 49 Spis_LOC111326440 not mapped 5.44 24.4 60.5% feature · violin
neuron_Atoh8 50 PFX29543.1 (Spis_XP_022784214_1) 6.07 24.3 59.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Stylophora pistillata, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 28 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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