Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis4614 epidermis2894 gastrodermis_alga_hosting755 gastrodermis_muscle663 neuron_Isl652 neuron_Atoh8628 calicoblast584 gastrodermis_like_2436 neuron_Pou4_2340 gland_2284 neurosecretory_progenitors232 digestive_filaments214 neuron_Pou4_Otp206 neuron_Pou4_1190 germline_oocytes_1182 neuron_Pou4_Gsx162 immune_3142 neuron_Isl_Nkx6136 immune_1126 gland_1_Xbp121 gland_3117 germline_oocytes_273 immune_455 immune_252 cnidocyte38

Showing the cell type that Spis_XP_022798397_1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
neuron_Pou4_Gsx 1 PFX34216.1 (Spis_XP_022786096_1) 5.74 18.1 87.7% feature · violin
neuron_Pou4_Gsx 2 PFX12956.1 (Spis_Spis23008_1) 10.51 16.1 73.5% feature · violin
neuron_Pou4_Gsx 3 PFX26795.1 (Spis_XP_022788581_1) 2.44 14.2 96.9% feature · violin
neuron_Pou4_Gsx 4 Spis_orphan_peak_7330 not mapped 5.59 13.0 62.3% feature · violin
neuron_Pou4_Gsx 5 PFX18634.1 (Spis_XP_022801612_1) 10.91 12.7 58.0% feature · violin
neuron_Pou4_Gsx 6 PFX33984.1 (Spis_XP_022793300_1) 5.46 12.4 59.3% feature · violin
neuron_Pou4_Gsx 7 Spis_orphan_peak_2635 not mapped 8.19 11.7 53.7% feature · violin
neuron_Pou4_Gsx 8 PFX18635.1 (Spis_XP_022801593_1) 10.02 11.1 50.6% feature · violin
neuron_Pou4_Gsx 9 PFX30017.1 (Spis_XP_022783353_1) 9.78 10.8 49.4% feature · violin
neuron_Pou4_Gsx 10 PFX23687.1 (Spis_XP_022793831_1) 2.89 10.7 67.3% feature · violin
neuron_Pou4_Gsx 11 PFX33009.1 (Spis_Spis2118_1) 9.54 10.3 47.5% feature · violin
neuron_Pou4_Gsx 12 Spis_orphan_peak_881 not mapped 4.52 10.2 51.9% feature · violin
neuron_Pou4_Gsx 13 Spis_XP_022796489_1 not mapped 7.40 10.0 46.3% feature · violin
neuron_Pou4_Gsx 14 PFX31733.1 (Spis_XP_022780540_1) 7.37 9.7 45.1% feature · violin
neuron_Pou4_Gsx 15 Spis_XP_022795472_1 not mapped 0.90 9.4 90.1% feature · violin
neuron_Pou4_Gsx 16 PFX16522.1 (Spis_XP_022804863_1) 7.79 9.4 43.2% feature · violin
neuron_Pou4_Gsx 17 PFX28767.1 (Spis_XP_022785429_1) 4.01 9.3 48.1% feature · violin
neuron_Pou4_Gsx 18 PFX20690.1 (Spis_XP_022798397_1) 10.59 9.3 42.6% feature · violin
neuron_Pou4_Gsx 19 PFX22593.1 (Spis_XP_022795448_1) 6.11 9.1 43.2% feature · violin
neuron_Pou4_Gsx 20 PFX32838.1 (Spis_XP_022810126_1) 4.48 9.0 45.1% feature · violin
neuron_Pou4_Gsx 21 PFX16004.1 (Spis_XP_022805628_1) 9.05 8.9 40.7% feature · violin
neuron_Pou4_Gsx 22 PFX29037.1 (Spis_XP_022784944_1) 4.16 8.9 45.1% feature · violin
neuron_Pou4_Gsx 23 PFX22351.1 (Spis_XP_022795771_1) 6.42 8.9 41.4% feature · violin
neuron_Pou4_Gsx 24 Spis_XP_022801297_1 not mapped 3.07 8.7 49.4% feature · violin
neuron_Pou4_Gsx 25 Spis_LOC111342887 not mapped 8.30 8.6 39.5% feature · violin
neuron_Pou4_Gsx 26 PFX29234.1 (Spis_XP_022784645_1) 5.95 8.5 40.1% feature · violin
neuron_Pou4_Gsx 27 PFX20140.1 (Spis_XP_022799227_1) 5.74 8.4 40.1% feature · violin
neuron_Pou4_Gsx 28 PFX23807.1 (Spis_XP_022793600_1) 6.68 8.4 38.9% feature · violin
neuron_Pou4_Gsx 29 PFX31351.1 (Spis_XP_022781105_1) 5.00 8.3 40.1% feature · violin
neuron_Pou4_Gsx 30 PFX26108.1 (Spis_XP_022789863_1) 4.38 8.3 41.4% feature · violin
neuron_Pou4_Gsx 31 PFX25565.1 (Spis_XP_022790783_1) 3.00 8.1 46.9% feature · violin
neuron_Pou4_Gsx 32 Spis_LOC111321834 not mapped 6.81 8.0 37.0% feature · violin
neuron_Pou4_Gsx 33 Spis_LOC111332530 not mapped 7.93 7.9 36.4% feature · violin
neuron_Pou4_Gsx 34 PFX31547.1 (Spis_XP_022780698_1) 4.85 7.9 38.3% feature · violin
neuron_Pou4_Gsx 35 Spis_LOC111325742 not mapped 7.97 7.7 35.8% feature · violin
neuron_Pou4_Gsx 36 PFX24695.1 (Spis_XP_022792089_1) 3.10 7.7 43.8% feature · violin
neuron_Pou4_Gsx 37 Spis_LOC111332032 not mapped 3.94 7.7 40.7% feature · violin
neuron_Pou4_Gsx 38 Spis_orphan_peak_5482 not mapped 6.26 7.5 35.2% feature · violin
neuron_Pou4_Gsx 39 PFX28304.1 (Spis_XP_022786197_1) 3.24 7.5 41.4% feature · violin
neuron_Pou4_Gsx 40 PFX22216.1 (Spis_XP_022796049_1) 5.88 7.2 34.0% feature · violin
neuron_Pou4_Gsx 41 PFX20151.1 (Spis_XP_022799225_1) 7.46 7.0 32.1% feature · violin
neuron_Pou4_Gsx 42 PFX31980.1 (Spis_Spis3186_1) 7.51 6.9 32.1% feature · violin
neuron_Pou4_Gsx 43 PFX33767.1 (Spis_XP_022795723_1) 7.01 6.9 32.1% feature · violin
neuron_Pou4_Gsx 44 PFX26066.1 (Spis_XP_022803007_1) 2.56 6.8 42.6% feature · violin
neuron_Pou4_Gsx 45 PFX23424.1 (Spis_XP_022794224_1) 1.78 6.8 50.6% feature · violin
neuron_Pou4_Gsx 46 PFX15966.1 (Spis_XP_022783674_1) 2.88 6.7 39.5% feature · violin
neuron_Pou4_Gsx 47 PFX23406.1 (Spis_XP_022794186_1) 3.68 6.7 34.6% feature · violin
neuron_Pou4_Gsx 48 PFX17598.1 (Spis_XP_022803275_1) 8.90 6.6 30.2% feature · violin
neuron_Pou4_Gsx 49 PFX25453.1 (Spis_XP_022791002_1) 6.82 6.5 30.2% feature · violin
neuron_Pou4_Gsx 50 PFX30876.1 (Spis_XP_022781951_1) 4.42 6.5 32.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Stylophora pistillata, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 12 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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