Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all gastrodermis4614 epidermis2894 gastrodermis_alga_hosting755 gastrodermis_muscle663 neuron_Isl652 neuron_Atoh8628 calicoblast584 gastrodermis_like_2436 neuron_Pou4_2340 gland_2284 neurosecretory_progenitors232 digestive_filaments214 neuron_Pou4_Otp206 neuron_Pou4_1190 germline_oocytes_1182 neuron_Pou4_Gsx162 immune_3142 neuron_Isl_Nkx6136 immune_1126 gland_1_Xbp121 gland_3117 germline_oocytes_273 immune_455 immune_252 cnidocyte38

Showing the cell type that Spis_XP_022799068_1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
immune_3 1 PFX27857.1 (Spis_XP_022786839_1) 8.70 20.3 99.3% feature · violin
immune_3 2 PFX23640.1 (Spis_XP_022793850_1) 10.97 20.1 98.6% feature · violin
immune_3 3 PFX15285.1 (Spis_Spis20505_1) 10.38 19.9 97.2% feature · violin
immune_3 4 PFX27666.1 (Spis_XP_022787216_1) 8.19 19.6 96.5% feature · violin
immune_3 5 PFX15741.1 (Spis_XP_022806069_1) 5.41 18.4 93.7% feature · violin
immune_3 6 Spis_orphan_peak_15397 not mapped 8.39 17.7 86.6% feature · violin
immune_3 7 PFX24982.1 (Spis_XP_022791712_1) 8.40 16.9 83.1% feature · violin
immune_3 8 PFX30610.1 (Spis_XP_022782354_1) 4.04 16.6 91.5% feature · violin
immune_3 9 PFX25565.1 (Spis_XP_022790783_1) 4.70 15.6 85.2% feature · violin
immune_3 10 Spis_orphan_peak_570 not mapped 6.34 15.2 76.1% feature · violin
immune_3 11 PFX33993.1 (Spis_XP_022791432_1) 2.60 15.0 99.3% feature · violin
immune_3 12 PFX20269.1 (Spis_XP_022799068_1) 2.56 15.0 98.6% feature · violin
immune_3 13 PFX26738.1 (Spis_XP_022788783_1) 8.93 14.8 72.5% feature · violin
immune_3 14 PFX22888.1 (Spis_XP_022795065_1) 3.09 14.6 96.5% feature · violin
immune_3 15 PFX28463.1 (Spis_XP_022785824_1) 7.05 14.3 71.1% feature · violin
immune_3 16 Spis_XP_022802816_1 not mapped 10.02 14.3 69.7% feature · violin
immune_3 17 Spis_XP_022804273_1 not mapped 5.78 14.2 71.8% feature · violin
immune_3 18 PFX15845.1 (Spis_XP_022805878_1) 4.31 14.1 76.1% feature · violin
immune_3 19 PFX17317.1 (Spis_XP_022803680_1) 3.82 13.9 80.3% feature · violin
immune_3 20 PFX26933.1 (Spis_XP_022788423_1) 2.67 13.9 96.5% feature · violin
immune_3 21 Spis_orphan_peak_13990 not mapped 5.09 13.7 70.4% feature · violin
immune_3 22 Spis_orphan_peak_17555 not mapped 1.90 13.6 100.0% feature · violin
immune_3 23 PFX17887.1 (Spis_XP_022802777_1) 3.29 13.5 81.0% feature · violin
immune_3 24 PFX31025.1 (Spis_XP_022781683_1) 9.61 13.4 65.5% feature · violin
immune_3 25 PFX28025.1 (Spis_XP_022786594_1) 5.24 13.4 69.7% feature · violin
immune_3 26 PFX29641.1 (Spis_XP_022794079_1) 2.41 13.3 92.3% feature · violin
immune_3 27 Spis_XP_022802168_1 not mapped 7.16 13.1 64.8% feature · violin
immune_3 28 Spis_XP_022794639_1 not mapped 5.49 12.9 65.5% feature · violin
immune_3 29 PFX33805.1 (Spis_XP_022794071_1) 3.11 12.8 81.0% feature · violin
immune_3 30 PFX24042.1 (Spis_XP_022793248_1) 3.03 12.8 81.7% feature · violin
immune_3 31 PFX22281.1 (Spis_XP_022795914_1) 4.42 12.7 67.6% feature · violin
immune_3 32 Spis_LOC111343750 not mapped 8.27 12.6 62.0% feature · violin
immune_3 33 PFX19335.1 (Spis_XP_022800559_1) 2.53 12.4 85.9% feature · violin
immune_3 34 Spis_orphan_peak_7355 not mapped 2.19 12.4 95.8% feature · violin
immune_3 35 PFX34205.1 (Spis_XP_022788482_1) 4.93 12.4 64.8% feature · violin
immune_3 36 PFX13399.1 (Spis_Spis22515_1) 7.72 12.3 60.6% feature · violin
immune_3 37 PFX20480.1 (Spis_XP_022798712_1) 7.33 11.8 58.5% feature · violin
immune_3 38 PFX20011.1 (Spis_XP_022799424_1) 7.64 11.7 57.7% feature · violin
immune_3 39 PFX27461.1 (Spis_XP_022787517_1) 7.44 11.7 57.7% feature · violin
immune_3 40 Spis_XP_022791196_1 not mapped 4.27 11.7 62.7% feature · violin
immune_3 41 PFX17422.1 (Spis_XP_022803516_1) 4.07 11.4 62.0% feature · violin
immune_3 42 PFX17461.1 (Spis_XP_022803475_1) 6.36 11.3 56.3% feature · violin
immune_3 43 PFX33778.1 (Spis_XP_022796766_1) 2.45 11.3 79.6% feature · violin
immune_3 44 Spis_orphan_peak_6121 not mapped 2.07 11.2 92.3% feature · violin
immune_3 45 PFX31849.1 (Spis_XP_022780276_1) 5.42 11.1 56.3% feature · violin
immune_3 46 Spis_LOC111339094 not mapped 3.18 11.0 71.1% feature · violin
immune_3 47 Spis_XP_022804459_1 not mapped 2.23 10.9 81.7% feature · violin
immune_3 48 Spis_XP_022785878_1 not mapped 2.34 10.9 78.9% feature · violin
immune_3 49 PFX26794.1 (Spis_XP_022788594_1) 2.62 10.9 72.5% feature · violin
immune_3 50 PFX32289.1 (Spis_Spis2876_1) 10.11 10.7 52.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Stylophora pistillata, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 15 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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