Genomic Location: not available for this species
NR annotation: MCP4459908.1, hypothetical protein [Cytophagales bacterium]
Species Alatina alata · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q9UPW0 | Forkhead box protein J3 OS=Homo sapiens OX=9606 GN=FOXJ3 PE=1 SV=2 |
| Q8BUR3 | Forkhead box protein J3 OS=Mus musculus OX=10090 GN=Foxj3 PE=1 SV=1 |
| Q28EM1 | Forkhead box protein J2 OS=Xenopus tropicalis OX=8364 GN=foxj2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000003 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000005 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000090 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000104 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000352 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000559 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001853 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0005594 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0008185 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0047911 (this species only) · gene tree & orthology |
| Transcription factor family | Fork_head · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05699 all species → | Dimer_Tnp_hAT | hAT family C-terminal dimerisation region | Domain | Interproscan |
| PF00250 all species → | Forkhead | Forkhead domain | Domain | Interproscan |
| PF20049 all species → | DUF6451 | Domain of unknown function (DUF6451) | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008906 all species → | Domain | HAT, C-terminal dimerisation domain | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR001766 all species → | Domain | Fork head domain | Interproscan |
| IPR030456 all species → | Conserved_site | Fork head domain conserved site 2 | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR045912 all species → | Family | Forkhead box protein J2/3-like | Interproscan |
| IPR018122 all species → | Conserved_site | Fork head domain conserved site1 | Interproscan |
| IPR045609 all species → | Domain | Domain of unknown function DUF6451 | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR000515 all species → | Domain | ABC transporter type 1, transmembrane domain MetI-like | Interproscan |
| IPR050951 all species → | Family | Retrovirus-related Pol polyprotein | Interproscan |
| IPR021109 all species → | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR001969 all species → | Active_site | Aspartic peptidase, active site | Interproscan |
| IPR052510 all species → | Family | Oomycete RxLR Effector | Interproscan |
| IPR036691 all species → | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR027124 all species → | Family | SWR1-complex protein 5/Craniofacial development protein 1/2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46078 all species → | FORKHEAD BOX PROTEIN J2 FAMILY MEMBER | Interproscan |
| PTHR47027 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR33198 all species → | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED | Interproscan |
| PTHR23139 all species → | RNA-BINDING PROTEIN | Interproscan |
| PTHR37984 all species → | PROTEIN CBG26694 | Interproscan |
| PTHR45895 all species → | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | Interproscan |
| PTHR23227 all species → | BUCENTAUR RELATED | Interproscan |
| PTHR19446 all species → | REVERSE TRANSCRIPTASES | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0046983 all species → | Molecular Function | protein dimerization activity | Interproscan |
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0043565 all species → | Molecular Function | sequence-specific DNA binding | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0000243 all species → | Cellular Component | commitment complex | Interproscan |
| GO:0008187 all species → | Molecular Function | poly-pyrimidine tract binding | Interproscan |
| GO:0016607 all species → | Cellular Component | nuclear speck | Interproscan |
| GO:0030628 all species → | Molecular Function | pre-mRNA 3'-splice site binding | Interproscan |
| GO:0071004 all species → | Cellular Component | U2-type prespliceosome | Interproscan |
| GO:0089701 all species → | Cellular Component | U2AF complex | Interproscan |
| GO:0004190 all species → | Molecular Function | aspartic-type endopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
Aala_g115.t1.Genes whose expression across the transcriptome samples of Alatina alata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alatina alata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
