Genomic Location: not available for this species
NR annotation: XP_028405783.1, uncharacterized protein LOC114528362 [Dendronephthya gigantea]
Species Alatina alata · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q09081 | Potassium voltage-gated channel subfamily A member 2 OS=Oryctolagus cuniculus OX=9986 GN=KCNA2 PE=1 SV=2 |
| P16389 | Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens OX=9606 GN=KCNA2 PE=1 SV=2 |
| P63141 | Potassium voltage-gated channel subfamily A member 2 OS=Mus musculus OX=10090 GN=Kcna2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000000 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000005 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000006 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000092 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000132 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001616 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0007409 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0009174 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0012377 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0029636 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00520 all species → | Ion_trans | Ion transport protein | Family | Interproscan |
| PF02214 all species → | BTB_2 | BTB/POZ domain | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF14529 all species → | Exo_endo_phos_2 | Endonuclease-reverse transcriptase | Domain | Interproscan |
| PF08477 all species → | Roc | Ras of Complex, Roc, domain of DAPkinase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011333 all species → | Homologous_superfamily | SKP1/BTB/POZ domain superfamily | Interproscan |
| IPR005821 all species → | Domain | Ion transport domain | Interproscan |
| IPR027359 all species → | Homologous_superfamily | Voltage-dependent channel domain superfamily | Interproscan |
| IPR003131 all species → | Domain | Potassium channel tetramerisation-type BTB domain | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR005135 all species → | Domain | Endonuclease/exonuclease/phosphatase | Interproscan |
| IPR036691 all species → | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR001878 all species → | Domain | Zinc finger, CCHC-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46880 all species → | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR11537 all species → | VOLTAGE-GATED POTASSIUM CHANNEL | Interproscan |
| PTHR33332 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR47027 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR34239 all species → | APPLE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR21301 all species → | REVERSE TRANSCRIPTASE | Interproscan |
| PTHR47331 all species → | PHD-TYPE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005216 all species → | Molecular Function | monoatomic ion channel activity | Interproscan |
| GO:0006811 all species → | Biological Process | monoatomic ion transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0051260 all species → | Biological Process | protein homooligomerization | Interproscan |
| GO:0005249 all species → | Molecular Function | voltage-gated potassium channel activity | Interproscan |
| GO:0005251 all species → | Molecular Function | delayed rectifier potassium channel activity | Interproscan |
| GO:0008076 all species → | Cellular Component | voltage-gated potassium channel complex | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
| GO:0071805 all species → | Biological Process | potassium ion transmembrane transport | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10356 | MYO1; myosin I | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Alatina alata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alatina alata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
