Genomic Location: not available for this species
NR annotation: XP_014663413.1, PREDICTED: uncharacterized protein K02A2.6-like [Priapulus caudatus]
Species Alatina alata · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P08548 | LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1 |
| P11369 | LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2 |
| O00370 | LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000005 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000022 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000045 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004344 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0005228 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0010160 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0012022 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0014234 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0014364 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0014487 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0016907 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0078193 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02390 all species → | Methyltransf_4 | Putative methyltransferase | Family | Interproscan |
| PF17921 all species → | Integrase_H2C2 | Integrase zinc binding domain | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF17917 all species → | RT_RNaseH | RNase H-like domain found in reverse transcriptase | Domain | Interproscan |
| PF13650 all species → | Asp_protease_2 | Aspartyl protease | Domain | Interproscan |
| PF01541 all species → | GIY-YIG | GIY-YIG catalytic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR026630 all species → | Family | EPM2A-interacting protein 1/ZBED8-like | Interproscan |
| IPR003358 all species → | Family | tRNA (guanine-N-7) methyltransferase, Trmb type | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR041588 all species → | Domain | Integrase zinc-binding domain | Interproscan |
| IPR050951 all species → | Family | Retrovirus-related Pol polyprotein | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR041373 all species → | Domain | Reverse transcriptase, RNase H-like domain | Interproscan |
| IPR001995 all species → | Domain | Peptidase A2A, retrovirus, catalytic | Interproscan |
| IPR021109 all species → | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR001969 all species → | Active_site | Aspartic peptidase, active site | Interproscan |
| IPR035901 all species → | Homologous_superfamily | GIY-YIG endonuclease superfamily | Interproscan |
| IPR000305 all species → | Domain | GIY-YIG endonuclease | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45913 all species → | EPM2A-INTERACTING PROTEIN 1 | Interproscan |
| PTHR23417 all species → | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE | Interproscan |
| PTHR37984 all species → | PROTEIN CBG26694 | Interproscan |
| PTHR35450 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR47027 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR46238 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR21301 all species → | REVERSE TRANSCRIPTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006400 all species → | Biological Process | tRNA modification | Interproscan |
| GO:0008176 all species → | Molecular Function | tRNA (guanine(46)-N7)-methyltransferase activity | Interproscan |
| GO:0030488 all species → | Biological Process | tRNA methylation | Interproscan |
| GO:0036265 all species → | Biological Process | RNA (guanine-N7)-methylation | Interproscan |
| GO:0043527 all species → | Cellular Component | tRNA methyltransferase complex | Interproscan |
| GO:0004190 all species → | Molecular Function | aspartic-type endopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
Aala_g1373.t1.Genes whose expression across the transcriptome samples of Alatina alata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alatina alata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
