Genomic Location: not available for this species
NR annotation: XP_047127802.1, uncharacterized protein LOC124808638 isoform X2 [Hydra vulgaris]
Species Alatina alata · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q6NRK3 | Ankyrin repeat domain-containing protein SOWAHB OS=Xenopus laevis OX=8355 GN=sowahb PE=2 SV=1 |
| P35604 | Coatomer subunit zeta-1 OS=Bos taurus OX=9913 GN=COPZ1 PE=1 SV=2 |
| P61923 | Coatomer subunit zeta-1 OS=Homo sapiens OX=9606 GN=COPZ1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000004 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000035 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000106 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000229 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001563 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0002418 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0002541 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0005896 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0006334 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0010948 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0011792 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0011945 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0025796 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0032531 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00023 all species → | Ank | Ankyrin repeat | Repeat | Interproscan |
| PF01217 all species → | Clat_adaptor_s | Clathrin adaptor complex small chain | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF18701 all species → | DUF5641 | Family of unknown function (DUF5641) | Domain | Interproscan |
| PF05380 all species → | Peptidase_A17 | Pao retrotransposon peptidase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050960 all species → | Family | AB hydrolase superfamily, subfamily 4 | Interproscan |
| IPR029058 all species → | Homologous_superfamily | Alpha/Beta hydrolase fold | Interproscan |
| IPR002110 all species → | Repeat | Ankyrin repeat | Interproscan |
| IPR036770 all species → | Homologous_superfamily | Ankyrin repeat-containing domain superfamily | Interproscan |
| IPR011012 all species → | Homologous_superfamily | Longin-like domain superfamily | Interproscan |
| IPR022775 all species → | Domain | AP complex, mu/sigma subunit | Interproscan |
| IPR039652 all species → | Family | Coatomer subunit zeta | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR040676 all species → | Domain | Domain of unknown function DUF5641 | Interproscan |
| IPR001878 all species → | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR008042 all species → | Family | Retrotransposon, Pao | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR051658 all species → | Family | Ubiquitin-like domain-containing CTD phosphatase 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10794 all species → | ABHYDROLASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR14491 all species → | UNCHARACTERIZED | Interproscan |
| PTHR21301 all species → | REVERSE TRANSCRIPTASE | Interproscan |
| PTHR11043 all species → | ZETA-COAT PROTEIN | Interproscan |
| PTHR47027 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR22955 all species → | RETROTRANSPOSON | Interproscan |
| PTHR48405 all species → | UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008126 all species → | Molecular Function | acetylesterase activity | Interproscan |
| GO:0034338 all species → | Molecular Function | short-chain carboxylesterase activity | Interproscan |
| GO:0044255 all species → | Biological Process | obsolete cellular lipid metabolic process | Interproscan |
| GO:0047372 all species → | Molecular Function | monoacylglycerol lipase activity | Interproscan |
| GO:0051792 all species → | Biological Process | medium-chain fatty acid biosynthetic process | Interproscan |
| GO:0051793 all species → | Biological Process | medium-chain fatty acid catabolic process | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0006890 all species → | Biological Process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Interproscan |
| GO:0006891 all species → | Biological Process | intra-Golgi vesicle-mediated transport | Interproscan |
| GO:0030126 all species → | Cellular Component | COPI vesicle coat | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0004722 all species → | Molecular Function | protein serine/threonine phosphatase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006470 all species → | Biological Process | protein dephosphorylation | Interproscan |
Aala_g1439.t1.Genes whose expression across the transcriptome samples of Alatina alata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alatina alata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
