Genomic Location: not available for this species
NR annotation: XP_031558336.1, uncharacterized protein LOC116294814, partial [Actinia tenebrosa]
Species Alatina alata · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 |
| P04323 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 |
| P20825 | Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000002 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000015 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000042 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000090 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000098 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000158 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000270 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000388 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001471 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0002134 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0006809 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0007991 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0041099 (this species only) · gene tree & orthology |
| Transcription factor family | zf-C2H2 · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18036 all species → | Ubiquitin_4 | Ubiquitin-like domain | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF13650 all species → | Asp_protease_2 | Aspartyl protease | Domain | Interproscan |
| PF01731 all species → | Arylesterase | Arylesterase | Repeat | Interproscan |
| PF10551 all species → | MULE | MULE transposase domain | Domain | Interproscan |
| PF00096 all species → | zf-C2H2 | Zinc finger, C2H2 type | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040610 all species → | Domain | SNRNP25, ubiquitin-like domain | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR039690 all species → | Family | U11/U12 small nuclear ribonucleoprotein 25kDa protein | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR021109 all species → | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR050951 all species → | Family | Retrovirus-related Pol polyprotein | Interproscan |
| IPR051288 all species → | Family | Serum paraoxonase/arylesterase | Interproscan |
| IPR011042 all species → | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| IPR002640 all species → | Family | Arylesterase | Interproscan |
| IPR018289 all species → | Domain | MULE transposase domain | Interproscan |
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR036236 all species → | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14942 all species → | U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN | Interproscan |
| PTHR19446 all species → | REVERSE TRANSCRIPTASES | Interproscan |
| PTHR37984 all species → | PROTEIN CBG26694 | Interproscan |
| PTHR21301 all species → | REVERSE TRANSCRIPTASE | Interproscan |
| PTHR11799 all species → | PARAOXONASE | Interproscan |
| PTHR47160 all species → | PUTATIVE-RELATED | Interproscan |
| PTHR24393 all species → | ZINC FINGER PROTEIN | Interproscan |
| PTHR33332 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000398 all species → | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0005689 all species → | Cellular Component | U12-type spliceosomal complex | Interproscan |
| GO:0004064 all species → | Molecular Function | arylesterase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13153 | SNRNP25; U11/U12 small nuclear ribonucleoprotein 25 kDa protein | - | Spliceosome | ko03041 | deepkoala |
Genes whose expression across the transcriptome samples of Alatina alata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alatina alata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
