Gene detail

Detailed information of Aala_g1925.t1 in Alatina alata

Genomic Location: not available for this species
NR annotation: MCG8112906.1, IS630 family transposase [Candidatus Thiodiazotropha endolucinida]
Species abbreviation AALAT · all data for this species · gene families

Sequence

Sequence data are not available for Alatina alata.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)
Orthogroup (gene family)	OG0000035 (this species only)
Orthogroup (gene family)	OG0000036 (this species only)
Orthogroup (gene family)	OG0000046 (this species only)
Orthogroup (gene family)	OG0000212 (this species only)
Orthogroup (gene family)	OG0000265 (this species only)
Orthogroup (gene family)	OG0001659 (this species only)
Orthogroup (gene family)	OG0002106 (this species only)
Orthogroup (gene family)	OG0007102 (this species only)
Orthogroup (gene family)	OG0007715 (this species only)
Orthogroup (gene family)	OG0008184 (this species only)
Orthogroup (gene family)	OG0009287 (this species only)
Orthogroup (gene family)	OG0017270 (this species only)
Orthogroup (gene family)	OG0029026 (this species only)
Orthogroup (gene family)	OG0039978 (this species only)
Orthogroup (gene family)	OG0057013 (this species only)
Orthogroup (gene family)	OG0074321 (this species only)
Orthogroup (gene family)	OG0128209 (this species only)
Orthogroup (gene family)	OG0128821 (this species only)
Orthogroup (gene family)	OG0132017 (this species only)
Orthogroup (gene family)	OG0132836 (this species only)
Orthogroup (gene family)	OG0142667 (this species only)
Orthogroup (gene family)	OG0144486 (this species only)
Orthogroup (gene family)	OG0146344 (this species only)
Orthogroup (gene family)	OG0151894 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13936 all species →	HTH_38	Helix-turn-helix domain	Domain	Interproscan
PF01498 all species →	HTH_Tnp_Tc3_2	Transposase	Family	Interproscan
PF13358 all species →	DDE_3	DDE superfamily endonuclease	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02210 all species →	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF21373 all species →	ZNHIT3_C	Zinc finger HIT domain-containing protein 3, C-terminal domain	Domain	Interproscan
PF21108 all species →	MDN1_4th	Midasin AAA+ ATPase lid domain	Domain	Interproscan
PF07728 all species →	AAA_5	AAA domain (dynein-related subfamily)	Domain	Interproscan
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF04006 all species →	Mpp10	Mpp10 protein	Family	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR052338 all species →	Family	Transposase_5	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR025246 all species →	Domain	Transposase IS30-like HTH domain	Interproscan
IPR002492 all species →	Domain	Transposase, Tc1-like	Interproscan
IPR038717 all species →	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR037696 all species →	Family	Coiled-coil domain-containing protein 77	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR053134 all species →	Family	RNA-directed DNA polymerase homolog	Interproscan
IPR050372 all species →	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR048371 all species →	Domain	Zinc finger HIT domain-containing protein 3, C-terminal domain	Interproscan
IPR048617 all species →	Domain	Midasin, lid domain 4	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011704 all species →	Domain	ATPase, dynein-related, AAA domain	Interproscan
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR012173 all species →	Family	U3 small nucleolar ribonucleoprotein complex, subunit Mpp10	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23022 all species →	TRANSPOSABLE ELEMENT-RELATED	Interproscan
PTHR22091 all species →	UNCHARACTERIZED	Interproscan
PTHR24559 all species →	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan
PTHR21301 all species →	REVERSE TRANSCRIPTASE	Interproscan
PTHR15036 all species →	PIKACHURIN-LIKE PROTEIN	Interproscan
PTHR48103 all species →	MIDASIN-RELATED	Interproscan
PTHR46599 all species →	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan
PTHR17039 all species →	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10	Interproscan
PTHR35450 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006313 all species →	Biological Process	DNA transposition	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0000055 all species →	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005732 all species →	Cellular Component	sno(s)RNA-containing ribonucleoprotein complex	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0034457 all species →	Cellular Component	Mpp10 complex	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Aala_g1925.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.