Detailed information of Aala_g2011.t1 in Alatina alata

Genomic Location: not available for this species
NR annotation: XP_047135025.1, general transcription factor IIH subunit 1 isoform X2 [Hydra vulgaris]
Species abbreviation AALAT · all data for this species · gene families

 Sequence
Sequence data are not available for Alatina alata.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000011 (this species only)
Orthogroup (gene family)OG0000011 (this species only)
Orthogroup (gene family)OG0000038 (this species only)
Orthogroup (gene family)OG0000041 (this species only)
Orthogroup (gene family)OG0000102 (this species only)
Orthogroup (gene family)OG0000913 (this species only)
Orthogroup (gene family)OG0002312 (this species only)
Orthogroup (gene family)OG0004796 (this species only)
Orthogroup (gene family)OG0006535 (this species only)
Orthogroup (gene family)OG0016342 (this species only)
Orthogroup (gene family)OG0016907 (this species only)
Orthogroup (gene family)OG0025380 (this species only)
Orthogroup (gene family)OG0035034 (this species only)
Orthogroup (gene family)OG0035039 (this species only)
Orthogroup (gene family)OG0035173 (this species only)
Orthogroup (gene family)OG0132984 (this species only)
Orthogroup (gene family)OG0136868 (this species only)
Orthogroup (gene family)OG0137188 (this species only)
Orthogroup (gene family)OG0138787 (this species only)
Orthogroup (gene family)OG0140649 (this species only)
Orthogroup (gene family)OG0142325 (this species only)
Orthogroup (gene family)OG0145470 (this species only)
Orthogroup (gene family)OG0148874 (this species only)
Orthogroup (gene family)OG0150666 (this species only)
Orthogroup (gene family)OG0151811 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14529
all species →		Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF14223
all species →		Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF07247
all species →		AATaseAlcohol acetyltransferaseFamilyInterproscan
PF01541
all species →		GIY-YIGGIY-YIG catalytic domainDomainInterproscan
PF08567
all species →		PH_TFIIHTFIIH p62 subunit, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036691
all species →		Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124
all species →		FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR005135
all species →		DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR036875
all species →		Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878
all species →		DomainZinc finger, CCHC-typeInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR052058
all species →		FamilyAlcohol O-acetyltransferase-related proteinInterproscan
IPR023213
all species →		Homologous_superfamilyChloramphenicol acetyltransferase-like domain superfamilyInterproscan
IPR010828
all species →		FamilyAlcohol acetyltransferase/N-acetyltransferaseInterproscan
IPR035901
all species →		Homologous_superfamilyGIY-YIG endonuclease superfamilyInterproscan
IPR000305
all species →		DomainGIY-YIG endonucleaseInterproscan
IPR027079
all species →		FamilyTFIIH subunit Tfb1/GTF2H1Interproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR013876
all species →		DomainTFIIH p62 subunit, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23227
all species →		BUCENTAUR RELATEDInterproscan
PTHR47481
all species →		-Interproscan
PTHR19446
all species →		REVERSE TRANSCRIPTASESInterproscan
PTHR28037
all species →		ALCOHOL O-ACETYLTRANSFERASE 1-RELATEDInterproscan
PTHR21301
all species →		REVERSE TRANSCRIPTASEInterproscan
PTHR12856
all species →		TRANSCRIPTION INITIATION FACTOR IIH-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006338
all species →		Biological Processchromatin remodelingInterproscan
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0000439
all species →		Cellular Componenttranscription factor TFIIH core complexInterproscan
GO:0005675
all species →		Cellular Componenttranscription factor TFIIH holo complexInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006289
all species →		Biological Processnucleotide-excision repairInterproscan
GO:0006351
all species →		Biological ProcessDNA-templated transcriptionInterproscan
GO:0006360
all species →		Biological Processtranscription by RNA polymerase IInterproscan
GO:0006366
all species →		Biological Processtranscription by RNA polymerase IIInterproscan
GO:0070816
all species →		Biological Processobsolete phosphorylation of RNA polymerase II C-terminal domainInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Aala_g2011.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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