Detailed information of Aala_g2012.t1 in Alatina alata

Genomic Location: not available for this species
NR annotation: XP_038063200.1, uncharacterized protein LOC119733909 [Patiria miniata]
Species abbreviation AALAT · all data for this species · gene families

 Sequence
Sequence data are not available for Alatina alata.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7LHG5Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
P04323Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q99315Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000003 (this species only)
Orthogroup (gene family)OG0000011 (this species only)
Orthogroup (gene family)OG0000036 (this species only)
Orthogroup (gene family)OG0000252 (this species only)
Orthogroup (gene family)OG0000252 (this species only)
Orthogroup (gene family)OG0001556 (this species only)
Orthogroup (gene family)OG0022913 (this species only)
Orthogroup (gene family)OG0024048 (this species only)
Orthogroup (gene family)OG0024051 (this species only)
Orthogroup (gene family)OG0025380 (this species only)
Orthogroup (gene family)OG0031729 (this species only)
Orthogroup (gene family)OG0039833 (this species only)
Orthogroup (gene family)OG0039899 (this species only)
Orthogroup (gene family)OG0074060 (this species only)
Orthogroup (gene family)OG0128655 (this species only)
Orthogroup (gene family)OG0130566 (this species only)
Orthogroup (gene family)OG0132378 (this species only)
Orthogroup (gene family)OG0135085 (this species only)
Orthogroup (gene family)OG0136600 (this species only)
Orthogroup (gene family)OG0138044 (this species only)
Orthogroup (gene family)OG0140180 (this species only)
Orthogroup (gene family)OG0141950 (this species only)
Orthogroup (gene family)OG0143275 (this species only)
Orthogroup (gene family)OG0145918 (this species only)
Orthogroup (gene family)OG0147152 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17917
all species →		RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF17921
all species →		Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665
all species →		rveIntegrase core domainDomainInterproscan
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050951
all species →		FamilyRetrovirus-related Pol polyproteinInterproscan
IPR001878
all species →		DomainZinc finger, CCHC-typeInterproscan
IPR001584
all species →		DomainIntegrase, catalytic coreInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128
all species →		Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR036875
all species →		Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR041373
all species →		DomainReverse transcriptase, RNase H-like domainInterproscan
IPR041588
all species →		DomainIntegrase zinc-binding domainInterproscan
IPR036397
all species →		Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR001969
all species →		Active_siteAspartic peptidase, active siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46238
all species →		REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR35450
all species →		REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR37984
all species →		PROTEIN CBG26694Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0015074
all species →		Biological ProcessDNA integrationInterproscan
GO:0004190
all species →		Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508
all species →		Biological ProcessproteolysisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10119msmG; raffinose/stachyose/melibiose transport system permease protein-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP