Gene detail

Detailed information of Aala_g2139.t1 in Alatina alata

Genomic Location: not available for this species
NR annotation: ROT63998.1, putative RNA-directed DNA polymerase from mobile element jockey-like [Penaeus vannamei]
Species abbreviation AALAT · all data for this species · gene families

Sequence

Sequence data are not available for Alatina alata.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q10126	Putative uncharacterized transposon-derived protein F52C9.6 OS=Caenorhabditis elegans OX=6239 GN=F52C9.6 PE=5 SV=1
O75112	LIM domain-binding protein 3 OS=Homo sapiens OX=9606 GN=LDB3 PE=1 SV=2
Q8CI51	PDZ and LIM domain protein 5 OS=Mus musculus OX=10090 GN=Pdlim5 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0000103 (this species only)
Orthogroup (gene family)	OG0000252 (this species only)
Orthogroup (gene family)	OG0000546 (this species only)
Orthogroup (gene family)	OG0000715 (this species only)
Orthogroup (gene family)	OG0000802 (this species only)
Orthogroup (gene family)	OG0000987 (this species only)
Orthogroup (gene family)	OG0002690 (this species only)
Orthogroup (gene family)	OG0003147 (this species only)
Orthogroup (gene family)	OG0006283 (this species only)
Orthogroup (gene family)	OG0009202 (this species only)
Orthogroup (gene family)	OG0012034 (this species only)
Orthogroup (gene family)	OG0014267 (this species only)
Orthogroup (gene family)	OG0024062 (this species only)
Orthogroup (gene family)	OG0024069 (this species only)
Orthogroup (gene family)	OG0035030 (this species only)
Orthogroup (gene family)	OG0039857 (this species only)
Orthogroup (gene family)	OG0074958 (this species only)
Orthogroup (gene family)	OG0136287 (this species only)
Orthogroup (gene family)	OG0138838 (this species only)
Orthogroup (gene family)	OG0140681 (this species only)
Orthogroup (gene family)	OG0145982 (this species only)
Orthogroup (gene family)	OG0147942 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07727 all species →	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF13976 all species →	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF14223 all species →	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR013103 all species →	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR025724 all species →	Domain	GAG-pre-integrase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000515 all species →	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050666 all species →	Family	Epithelial Splicing Regulatory	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR026175 all species →	Family	Mirror-image polydactyly gene 1 protein	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR050540 all species →	Family	F-actin Monooxygenase Mical	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR050604 all species →	Family	PDZ and LIM domain-containing	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42648 all species →	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR47481 all species →	-	Interproscan
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan
PTHR38585 all species →	-	Interproscan
PTHR13976 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan
PTHR22089 all species →	MIRROR-IMAGE POLYDACTYLY GENE 1 PROTEIN	Interproscan
PTHR23167 all species →	CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED	Interproscan
PTHR38681 all species →	RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED	Interproscan
PTHR46238 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24214 all species →	PDZ AND LIM DOMAIN PROTEIN ZASP	Interproscan
PTHR46704 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007276 all species →	Biological Process	gamete generation	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001725 all species →	Cellular Component	stress fiber	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0030018 all species →	Cellular Component	Z disc	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031941 all species →	Cellular Component	filamentous actin	Interproscan
GO:0051371 all species →	Molecular Function	muscle alpha-actinin binding	Interproscan
GO:0061061 all species →	Biological Process	muscle structure development	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24177	SERINC4; serine incorporator 4	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.