Genomic Location: not available for this species
NR annotation: XP_035662901.1, uncharacterized protein LOC118406705 [Branchiostoma floridae]
Species Alatina alata · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q05118 | Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1 |
| Q502W7 | Coiled-coil domain-containing protein 38 OS=Homo sapiens OX=9606 GN=CCDC38 PE=1 SV=1 |
| Q4R8V8 | Cilia- and flagella-associated protein 100 OS=Macaca fascicularis OX=9541 GN=CFAP100 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000001 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000004 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000037 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000040 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000135 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000220 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001616 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003537 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0006434 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0008133 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0008905 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0014228 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0015134 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF03564 all species → | DUF1759 | Protein of unknown function (DUF1759) | Family | Interproscan |
| PF00001 all species → | 7tm_1 | 7 transmembrane receptor (rhodopsin family) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040396 all species → | Family | Polyadenylate-binding protein-interacting protein 2-like | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR005312 all species → | Family | Protein of unknown function DUF1759 | Interproscan |
| IPR017452 all species → | Domain | GPCR, rhodopsin-like, 7TM | Interproscan |
| IPR000276 all species → | Family | G protein-coupled receptor, rhodopsin-like | Interproscan |
| IPR050951 all species → | Family | Retrovirus-related Pol polyprotein | Interproscan |
| IPR021109 all species → | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13154 all species → | POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 2 | Interproscan |
| PTHR47027 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR24248 all species → | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR | Interproscan |
| PTHR37984 all species → | PROTEIN CBG26694 | Interproscan |
| PTHR35450 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000900 all species → | Molecular Function | mRNA regulatory element binding translation repressor activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0017148 all species → | Biological Process | negative regulation of translation | Interproscan |
| GO:0030371 all species → | Molecular Function | translation repressor activity | Interproscan |
| GO:0045947 all species → | Biological Process | negative regulation of translational initiation | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0004930 all species → | Molecular Function | G protein-coupled receptor activity | Interproscan |
| GO:0007186 all species → | Biological Process | G protein-coupled receptor signaling pathway | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
Aala_g215.t1.Genes whose expression across the transcriptome samples of Alatina alata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alatina alata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
