Genomic Location: not available for this species
NR annotation: XP_027056056.1, thymocyte nuclear protein 1-like [Pocillopora damicornis]
Species Alatina alata · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q91YJ3 | Thymocyte nuclear protein 1 OS=Mus musculus OX=10090 GN=Thyn1 PE=1 SV=1 |
| Q6PFL8 | Thymocyte nuclear protein 1 OS=Danio rerio OX=7955 GN=thyn1 PE=2 SV=1 |
| Q9P016 | Thymocyte nuclear protein 1 OS=Homo sapiens OX=9606 GN=THYN1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000005 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000015 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000270 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000520 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000961 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0002673 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004426 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0005814 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0025807 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0059267 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01878 all species → | EVE | EVE domain | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF06470 all species → | SMC_hinge | SMC proteins Flexible Hinge Domain | Domain | Interproscan |
| PF05699 all species → | Dimer_Tnp_hAT | hAT family C-terminal dimerisation region | Domain | Interproscan |
| PF13181 all species → | TPR_8 | Tetratricopeptide repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR052181 all species → | Family | 5-Hydroxymethylcytosine binding | Interproscan |
| IPR015947 all species → | Homologous_superfamily | PUA-like superfamily | Interproscan |
| IPR002740 all species → | Domain | EVE domain | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR052510 all species → | Family | Oomycete RxLR Effector | Interproscan |
| IPR010935 all species → | Domain | SMCs flexible hinge | Interproscan |
| IPR036277 all species → | Homologous_superfamily | SMCs flexible hinge superfamily | Interproscan |
| IPR026630 all species → | Family | EPM2A-interacting protein 1/ZBED8-like | Interproscan |
| IPR008906 all species → | Domain | HAT, C-terminal dimerisation domain | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR051966 all species → | Family | RNA polymerase II-associated protein 3 | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR019734 all species → | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR036860 all species → | Homologous_superfamily | SH2 domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14087 all species → | THYMOCYTE NUCLEAR PROTEIN 1 | Interproscan |
| PTHR33332 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR45895 all species → | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | Interproscan |
| PTHR18937 all species → | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER | Interproscan |
| PTHR45913 all species → | EPM2A-INTERACTING PROTEIN 1 | Interproscan |
| PTHR47027 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR46423 all species → | RNA POLYMERASE II-ASSOCIATED PROTEIN 3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005694 all species → | Cellular Component | chromosome | Interproscan |
| GO:0051276 all species → | Biological Process | chromosome organization | Interproscan |
| GO:0000799 all species → | Cellular Component | condensin complex | Interproscan |
| GO:0007076 all species → | Biological Process | mitotic chromosome condensation | Interproscan |
| GO:0046983 all species → | Molecular Function | protein dimerization activity | Interproscan |
| GO:0101031 all species → | Cellular Component | protein folding chaperone complex | Interproscan |
Aala_g2539.t1.Genes whose expression across the transcriptome samples of Alatina alata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alatina alata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
