Genomic Location: not available for this species
NR annotation: XP_044168695.1, uncharacterized protein LOC122952963 [Acropora millepora]
Species Alatina alata · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P15848 | Arylsulfatase B OS=Homo sapiens OX=9606 GN=ARSB PE=1 SV=1 |
| P50430 | Arylsulfatase B OS=Rattus norvegicus OX=10116 GN=Arsb PE=2 SV=2 |
| P50429 | Arylsulfatase B OS=Mus musculus OX=10090 GN=Arsb PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000030 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000111 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000161 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000792 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003305 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0005441 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0007700 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0009174 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0010973 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0012179 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00640 all species → | PID | Phosphotyrosine interaction domain (PTB/PID) | Domain | Interproscan |
| PF00884 all species → | Sulfatase | Sulfatase | Family | Interproscan |
| PF03834 all species → | Rad10 | Binding domain of DNA repair protein Ercc1 (rad10/Swi10) | Family | Interproscan |
| PF00754 all species → | F5_F8_type_C | F5/8 type C domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006020 all species → | Domain | PTB/PI domain | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR051133 all species → | Family | Adapter and Engulfment Domain-Containing Protein | Interproscan |
| IPR024607 all species → | Conserved_site | Sulfatase, conserved site | Interproscan |
| IPR047115 all species → | Family | Arylsulfatase B | Interproscan |
| IPR017850 all species → | Homologous_superfamily | Alkaline-phosphatase-like, core domain superfamily | Interproscan |
| IPR000917 all species → | Domain | Sulfatase, N-terminal | Interproscan |
| IPR011335 all species → | Homologous_superfamily | Restriction endonuclease type II-like | Interproscan |
| IPR047260 all species → | Domain | ERCC1-like, central domain | Interproscan |
| IPR051941 all species → | Family | Blood Group Antigen-Binding Lectin | Interproscan |
| IPR000421 all species → | Domain | Coagulation factor 5/8 C-terminal domain | Interproscan |
| IPR006585 all species → | Domain | Fucolectin tachylectin-4 pentraxin-1 | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR34615 all species → | PX DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR11232 all species → | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER | Interproscan |
| PTHR35450 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR10342 all species → | ARYLSULFATASE | Interproscan |
| PTHR45713 all species → | FTP DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008484 all species → | Molecular Function | sulfuric ester hydrolase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01135 | ARSB; arylsulfatase B | EC:3.1.6.12 | Lysosome | ko04142 | deepkoala |
| K12474 | LDLRAP1, ARH; low density lipoprotein receptor adapter protein 1 | - | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Alatina alata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alatina alata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
