Genomic Location: not available for this species
NR annotation: XP_033099372.1, craniofacial development protein 2-like [Anneissia japonica]
Species Alatina alata · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| O02751 | Craniofacial development protein 2 OS=Bos taurus OX=9913 GN=CFDP2 PE=1 SV=2 |
| Q588U8 | Craniofacial development protein 2 OS=Tragulus javanicus OX=9849 GN=CFDP2 PE=2 SV=1 |
| Q95SX7 | Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000003 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000005 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000015 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000135 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004244 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0012749 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0018078 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0023162 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0057745 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0059603 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF13499 all species → | EF-hand_7 | EF-hand domain pair | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037524 all species → | Domain | PA14/GLEYA domain | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR002048 all species → | Domain | EF-hand domain | Interproscan |
| IPR011992 all species → | Homologous_superfamily | EF-hand domain pair | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR018247 all species → | Binding_site | EF-Hand 1, calcium-binding site | Interproscan |
| IPR036691 all species → | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR027124 all species → | Family | SWR1-complex protein 5/Craniofacial development protein 1/2 | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR050951 all species → | Family | Retrovirus-related Pol polyprotein | Interproscan |
| IPR021109 all species → | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR000104 all species → | Family | Antifreeze protein, type I | Interproscan |
| IPR017452 all species → | Domain | GPCR, rhodopsin-like, 7TM | Interproscan |
| IPR050569 all species → | Family | Trace Amine-Associated Receptor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46670 all species → | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR23227 all species → | BUCENTAUR RELATED | Interproscan |
| PTHR37984 all species → | PROTEIN CBG26694 | Interproscan |
| PTHR21301 all species → | REVERSE TRANSCRIPTASE | Interproscan |
| PTHR24249 all species → | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0050825 all species → | Molecular Function | ice binding | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
Aala_g39.t1.Genes whose expression across the transcriptome samples of Alatina alata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alatina alata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
