Gene detail

Detailed information of Aala_g484.t1 in Alatina alata

Genomic Location: not available for this species
NR annotation: XP_044172065.1, zinc finger MYM-type protein 1-like [Acropora millepora]
Species abbreviation AALAT · all data for this species · gene families

Sequence

Sequence data are not available for Alatina alata.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SVZ6	Zinc finger MYM-type protein 1 OS=Homo sapiens OX=9606 GN=ZMYM1 PE=1 SV=1
Q6GNT7	Golgin subfamily A member 5 OS=Xenopus laevis OX=8355 GN=golga5 PE=2 SV=1
Q3ZU82	Golgin subfamily A member 5 OS=Rattus norvegicus OX=10116 GN=Golga5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000493 (this species only)
Orthogroup (gene family)	OG0001342 (this species only)
Orthogroup (gene family)	OG0001442 (this species only)
Orthogroup (gene family)	OG0001622 (this species only)
Orthogroup (gene family)	OG0002144 (this species only)
Orthogroup (gene family)	OG0004071 (this species only)
Orthogroup (gene family)	OG0010053 (this species only)
Orthogroup (gene family)	OG0012233 (this species only)
Orthogroup (gene family)	OG0013691 (this species only)
Orthogroup (gene family)	OG0014269 (this species only)
Orthogroup (gene family)	OG0018449 (this species only)
Orthogroup (gene family)	OG0025352 (this species only)
Orthogroup (gene family)	OG0031798 (this species only)
Orthogroup (gene family)	OG0035106 (this species only)
Orthogroup (gene family)	OG0039866 (this species only)
Orthogroup (gene family)	OG0074442 (this species only)
Orthogroup (gene family)	OG0128989 (this species only)
Orthogroup (gene family)	OG0132995 (this species only)
Orthogroup (gene family)	OG0136487 (this species only)
Orthogroup (gene family)	OG0138009 (this species only)
Orthogroup (gene family)	OG0141112 (this species only)
Orthogroup (gene family)	OG0142044 (this species only)
Orthogroup (gene family)	OG0146766 (this species only)
Orthogroup (gene family)	OG0149379 (this species only)
Orthogroup (gene family)	OG0150971 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species
Ubiquitin family	UBD\|Alpha-Helix\|UIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF02190 all species →	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan
PF18554 all species →	PheRS_DBD2	PheRS DNA binding domain 2	Domain	Interproscan
PF14291 all species →	DUF4371	Domain of unknown function (DUF4371)	Family	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF12775 all species →	AAA_7	P-loop containing dynein motor region	Domain	Interproscan
PF17857 all species →	AAA_lid_1	AAA+ lid domain	Domain	Interproscan
PF09787 all species →	Golgin_A5	Golgin subfamily A member 5	Coiled-coil	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF09668 all species →	Asp_protease	Aspartyl protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046336 all species →	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003111 all species →	Domain	Lon protease, N-terminal domain	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR040586 all species →	Domain	PheRS DNA binding domain 2	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR025398 all species →	Domain	Domain of unknown function DUF4371	Interproscan
IPR001589 all species →	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR039959 all species →	Family	Fimbrin/Plastin	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041589 all species →	Domain	Dynein heavy chain 3, AAA+ lid domain	Interproscan
IPR019177 all species →	Family	Golgin subfamily A member 5	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR051714 all species →	Family	CCHC-type Zinc Finger Nucleic Acid Binding	Interproscan
IPR019103 all species →	Domain	Aspartic peptidase, DDI1-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46114 all species →	APPLE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23327 all species →	RING FINGER PROTEIN 127	Interproscan
PTHR45749 all species →	-	Interproscan
PTHR19961 all species →	FIMBRIN/PLASTIN	Interproscan
PTHR45703 all species →	DYNEIN HEAVY CHAIN	Interproscan
PTHR23002 all species →	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0032432 all species →	Cellular Component	actin filament bundle	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0051017 all species →	Biological Process	actin filament bundle assembly	Interproscan
GO:0051639 all species →	Biological Process	actin filament network formation	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0045182 all species →	Molecular Function	translation regulator activity	Interproscan
GO:2000767 all species →	Biological Process	positive regulation of cytoplasmic translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26529	F2L; Poxviridae dUTP diphosphatase	EC:3.6.1.23	Viral proteins	ko03200	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.