Gene detail

Detailed information of Aala_g86.t1 in Alatina alata

Genomic Location: not available for this species
NR annotation: VUZ56485.1, unnamed protein product [Hymenolepis diminuta]
Species abbreviation AALAT · all data for this species · gene families

Sequence

Sequence data are not available for Alatina alata.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CT41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1
P0CT34	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1
P0CT35	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000015 (this species only)
Orthogroup (gene family)	OG0000045 (this species only)
Orthogroup (gene family)	OG0000045 (this species only)
Orthogroup (gene family)	OG0000317 (this species only)
Orthogroup (gene family)	OG0000715 (this species only)
Orthogroup (gene family)	OG0000934 (this species only)
Orthogroup (gene family)	OG0000986 (this species only)
Orthogroup (gene family)	OG0001086 (this species only)
Orthogroup (gene family)	OG0002456 (this species only)
Orthogroup (gene family)	OG0002750 (this species only)
Orthogroup (gene family)	OG0003348 (this species only)
Orthogroup (gene family)	OG0005833 (this species only)
Orthogroup (gene family)	OG0010918 (this species only)
Orthogroup (gene family)	OG0012390 (this species only)
Orthogroup (gene family)	OG0015420 (this species only)
Orthogroup (gene family)	OG0022896 (this species only)
Orthogroup (gene family)	OG0046457 (this species only)
Orthogroup (gene family)	OG0057372 (this species only)
Orthogroup (gene family)	OG0074256 (this species only)
Orthogroup (gene family)	OG0130275 (this species only)
Orthogroup (gene family)	OG0138763 (this species only)
Orthogroup (gene family)	OG0139364 (this species only)
Orthogroup (gene family)	OG0148081 (this species only)
Orthogroup (gene family)	OG0149376 (this species only)
Orthogroup (gene family)	OG0150578 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02148 all species →	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF03137 all species →	OATP	Organic Anion Transporter Polypeptide (OATP) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051145 all species →	Family	Growth Arrest-Specific/Sex Hormone-Binding/Vitamin K-Dependent	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001607 all species →	Domain	Zinc finger, UBP-type	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR033809 all species →	Family	USP39	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR014010 all species →	Domain	REJ domain	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR004156 all species →	Family	Organic anion transporter polypeptide	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR24040 all species →	LAMININ G-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan
PTHR11388 all species →	ORGANIC ANION TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0043491 all species →	Biological Process	phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan
GO:0048018 all species →	Molecular Function	receptor ligand activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0000245 all species →	Biological Process	spliceosomal complex assembly	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10576	UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H	EC:2.3.2.23	Ubiquitin system	ko04121	deepkoala
K12847	USP39, SAD1; U4/U6.U5 tri-snRNP-associated protein 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.