Genomic Location: not available for this species
NR annotation: XP_044169761.1, uncharacterized protein LOC122953829 [Acropora millepora]
Species Alatina alata · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q8NB25 | Protein FAM184A OS=Homo sapiens OX=9606 GN=FAM184A PE=1 SV=3 |
| Q0KK56 | Protein FAM184B OS=Mus musculus OX=10090 GN=Fam184b PE=2 SV=1 |
| Q9ULE4 | Protein FAM184B OS=Homo sapiens OX=9606 GN=FAM184B PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000000 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000005 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000040 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000042 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000297 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0002012 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0002556 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004383 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004578 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0009237 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0014486 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00278 all species → | Orn_DAP_Arg_deC | Pyridoxal-dependent decarboxylase, C-terminal sheet domain | Domain | Interproscan |
| PF02784 all species → | Orn_Arg_deC_N | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | Domain | Interproscan |
| PF18701 all species → | DUF5641 | Family of unknown function (DUF5641) | Domain | Interproscan |
| PF07727 all species → | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | Family | Interproscan |
| PF15665 all species → | FAM184 | Family with sequence similarity 184, A and B | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029066 all species → | Homologous_superfamily | PLP-binding barrel | Interproscan |
| IPR000183 all species → | Family | Ornithine/DAP/Arg decarboxylase | Interproscan |
| IPR022643 all species → | Domain | Orn/DAP/Arg decarboxylase 2, C-terminal | Interproscan |
| IPR009006 all species → | Homologous_superfamily | Alanine racemase/group IV decarboxylase, C-terminal | Interproscan |
| IPR002433 all species → | Family | Ornithine decarboxylase | Interproscan |
| IPR022644 all species → | Domain | Orn/DAP/Arg decarboxylase 2, N-terminal | Interproscan |
| IPR004244 all species → | Family | Transposase, L1 | Interproscan |
| IPR040676 all species → | Domain | Domain of unknown function DUF5641 | Interproscan |
| IPR013103 all species → | Domain | Reverse transcriptase, RNA-dependent DNA polymerase | Interproscan |
| IPR052510 all species → | Family | Oomycete RxLR Effector | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR039478 all species → | Domain | Protein FAM184A/B, N-terminal | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR35450 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR11482 all species → | ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE | Interproscan |
| PTHR11505 all species → | L1 TRANSPOSABLE ELEMENT-RELATED | Interproscan |
| PTHR22955 all species → | RETROTRANSPOSON | Interproscan |
| PTHR45895 all species → | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | Interproscan |
| PTHR18870 all species → | PROTEIN TAG-278-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0004586 all species → | Molecular Function | ornithine decarboxylase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006596 all species → | Biological Process | polyamine biosynthetic process | Interproscan |
| GO:0033387 all species → | Biological Process | putrescine biosynthetic process from ornithine | Interproscan |
| GO:0003727 all species → | Molecular Function | single-stranded RNA binding | Interproscan |
| GO:0032197 all species → | Biological Process | retrotransposition | Interproscan |
| GO:1990904 all species → | Cellular Component | ribonucleoprotein complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17553 | PPP1R11; protein phosphatase 1 regulatory subunit 11 | - | Protein phosphatases and associated proteins | ko01009 | deepkoala |
Genes whose expression across the transcriptome samples of Alatina alata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Alatina alata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
