Genomic Location: scaffold34:376623...379080
NR annotation: KAI0229188.1, Cathepsin B [Lamellibrachia satsuma]
Species Nemopilema nomurai · all data for this species · gene families
| CDS |
| BRAKERMNPT00000008924 |
| Transcript |
| BRAKERMNPT00000008924 |
| Protein |
| BRAKERMNPP00000008924.1 |
| UniProt accession | Description |
|---|---|
| P83205 | Cathepsin B OS=Ovis aries OX=9940 GN=CTSB PE=1 SV=2 |
| P07688 | Cathepsin B OS=Bos taurus OX=9913 GN=CTSB PE=1 SV=5 |
| A1E295 | Cathepsin B OS=Sus scrofa OX=9823 GN=CTSB PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001953 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08127 all species → | Propeptide_C1 | Peptidase family C1 propeptide | Motif | Interproscan |
| PF00112 all species → | Peptidase_C1 | Papain family cysteine protease | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000169 all species → | Active_site | Cysteine peptidase, cysteine active site | Interproscan |
| IPR000668 all species → | Domain | Peptidase C1A, papain C-terminal | Interproscan |
| IPR012599 all species → | Domain | Peptidase C1A, propeptide | Interproscan |
| IPR025661 all species → | Active_site | Cysteine peptidase, asparagine active site | Interproscan |
| IPR013128 all species → | Family | Peptidase C1A | Interproscan |
| IPR038765 all species → | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR025660 all species → | Active_site | Cysteine peptidase, histidine active site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12411 all species → | CYSTEINE PROTEASE FAMILY C1-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008234 all species → | Molecular Function | cysteine-type peptidase activity | Interproscan |
| GO:0004197 all species → | Molecular Function | cysteine-type endopeptidase activity | Interproscan |
| GO:0050790 all species → | Biological Process | regulation of catalytic activity | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0005764 all species → | Cellular Component | lysosome | Interproscan |
| GO:0051603 all species → | Biological Process | proteolysis involved in protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01363 | CTSB; cathepsin B | EC:3.4.22.1 | Glycosaminoglycan binding proteins | ko00536 | deepkoala |
Genes whose expression across the transcriptome samples of Nemopilema nomurai tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Nemopilema nomurai, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
