Species Overview — Nemopilema nomurai

CnidoSite currently holds 8 of the 15 data types it covers for Nemopilema nomurai. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

✓ 18,405 records

Predicted gene models with CDS / transcript / protein sequences

Open Gene models →

Functional annotation

✓ available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function →
InterPro by gene ID · Pfam by gene ID · GO by gene ID · KEGG by gene ID

Gene family (orthogroup)

✓ available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family →
Orthogroup browser

Bulk transcriptome

✓ 9 records

RNA-seq samples with expression values (TPM)

Open Transcriptome →
Dynamic Expression View

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

— not available

Mass-spectrometry proteomics samples

Open Proteome anyway →

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome anyway →

Metagenome

— not available

Host-associated metagenomic samples

Open Metagenome anyway →

Phenotype

✓ 13 records

Trait measurements with geo-referencing

Open Phenotype →

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Open Paleobiology anyway →

Mitogenome

✓ 29 records

Mitochondrial genome record and gene annotations

Open Mitogenome →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

✓ available

Interactive JBrowse track for the assembly

Open JBrowse →

Assembly record

Assembly

Assembly name
NemNom1.0
Assembly level
Scaffold
Assembly accession
GCA_003864495.1
Assembled by
Ulsan National Institute of Science and Technology
Year
2018

Genome statistics

Genome size
203.72 Mb
GC content
38%
Scaffolds
251
Scaffold N50
2.71 Mb
Contigs
1,463
Contig N50
849.3 kb

Annotation

BUSCO
Complete, single-copy 72.7%Complete, duplicated 8.1%Fragmented 6.8%Missing 12.5%

Identifiers

WGS accession
PEDN01
BioProject
PRJNA415234

Other Scyphozoa species

Aurelia coeruleaAurelia sp. 4 Dawson et al 2005Cassiopea sp. PORT0000214Cassiopea xamachanaCatostylus mosaicusMastigias papuaNemopilema nomuraiRhopilema esculentumChrysaora quinquecirrhaPelagia noctilucaSanderia malayensisAurelia auritaAurelia aurita complex sp. PacificAurelia sp. 3 sensu Dawson et al. (2005)Cassiopea andromedaCassiopea ornataChrysaora achlyosChrysaora chesapeakeiChrysaora fuscescensMastigias albipunctataNausithoe racemosaPhacellophora camtschaticaPhyllorhiza punctataPseudorhiza aurosaStomolophus meleagrisChrysaora pentastomaRhizostoma luteum
See all Scyphozoa species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-23 01:34). If a data type is listed as unavailable for Nemopilema nomurai, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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