Gene detail

Detailed information of BRAKERMNPP00000012237.1 in Nemopilema nomurai

Genomic Location: not available for this species
NR annotation: XP_020614183.1, cell division cycle protein 23 homolog [Orbicella faveolata]
Species abbreviation NNOMU · all data for this species · gene families

Sequence

CDS

BRAKERMNPT00000012237

ATGTCTGCACTGTCCAATGTATCCCTTTCAGATGTGTCTAAGGACTTGTTGCGATCCGTGAAAGAGTGCAATGCACGCGGTCTTATTCATTCAGCTAATTGGGCAATCGAGCTAGCCTCATCACTCCCACCATTGAAGTGTCTTCCAATACCTGAAGAAGAAGTGACTGAAGATTTCAAGGAAGAGTTTTATGCCTACAGTTTAGCGAAAAGCTACTTTGACTTGAAGGAATTTGAAAGGGCTTCACATGTGTCCAGAAACTGCAAAAGTCATAGAGGATATTTTCTACACTTGTATTCATTGTACATGAGTggtgaaaagaagaaaaggtaCCAGATGGTAGATGTTCTTGAACCAAGTAGCaaagcaattgaaaatgaagagcTTCGCGGACTGCGATCAGAACTTCAGAACAATGTAGATAAACTGGATGGGTactgtttctttttATATGGTGTTGTGCTGAATGGATTGAGTTTGTACTCAGAGGCaattgaaatgcttttaaaagCTGTAGAAAAAGAGCCAGTGAACTGGGGAGCATGGAAGGAGCTTGCTTCAATTTGTAAAAATAGAGAAACAcTCCAAAATCTCAAGTTGCCAAATCACTGGATGGCAGAATTCTTTCAAGCACAGGCAGAACTAGAGGTGCAAATGACAGAAGAAGCCTTGAGGAGATATGAGAATATTTGTTCTGCAGGCTTTGCTAAGAGCACATACATTAAACAGCAAATGGCATTGGCATTTTATAATCTAAGAGATTTTGCTCAGGCCACAGAACACTTCAAAGAAATTCAAGCCAAAGATCCATACATGCTGGAGCATGTGGACACATATTCTAACATTCTTTACATTCAGGATTCAAAAGCTGAACTGAGCTATTTGGCGCATAGGGTTGCTGAAGTTGACAAATACAGATATGAGTCTTGCGGCGTTATTGGAAACTACTACAGCCTTCGCGGGCAGCACGAAAAGGCGGTGTTGTATTTTCGCCAAGCGTTGAAACTGAACCCACAGCATGTTGTTGCGTGGACGCTTCTTGGTCATGAATACGTCGAATTGAAAAACACATCAGCCGCAATCGAATCATACAGACGGGCTACCGAGGCGACCGCCAAAGACTATAGAGCCTGGTATGGACTTGGTCAGACCTACGAAATTCTGAAGATGCCCTACTATTCCTTGTACTACTACAATGAGGCTTACAAGCTCAGACCATACGATTCGCGAATACTTATCGCGCTTGGAGATACGTACCATAGCTTGGACAAAAACGAGGAAGCGAAGAAGTGTTATCTAAAAGCATTTAGGATTGGTGACCCCGAAGGACAAGCCTCTATGAAGGTTGCCAAGCTCTATTTGCAATCCGGAGAAGATGACAATGCTTTCAGGCTGTATTCGATCGTTCTGGATGATACCGATCAATCAGCGTTCCATGCGAGCGAGGACGTGGCGAAGGGCTTAGTGTTTGCAGCGAGGTACTGTTTGAAGACAGGAAAGTACAACGAGGCTGAAGCATATGGCCGACGGGCCACTGAGCATATCGAAACCCGCGAGGAGGCAAGGAGTCTTCTTTACGAAATACGGCAAGCCCGACTTGGCAATGAGACCCCGGATGTAGACGCCGCTCATTTACACTGGATATTCAGCGTGCCAGTTGGCATCACAATCTGCATCATTGGTCTGATCGGCAACGCGATTTCAATATGCGCTTGGTGGAGAATAAAGAACTCGAAAAGGAGTGGCGGACTAGCAACGACCATATACCTCATCACCCTGGGCATTGTCGACAGTGGTCTGCTGTTCTTCTTTTTACTTGTGGACACAATTCCTGGAAATAACCCGTCAGTCAAGGAAACCTATTCCTATGCTGCGTTCTATTCCTACTTTGGATTCcctattttcttcttttttattgttgcTAGTATCTGGATTATGGTCGGAGTGACTATCACTCGATATATTATGGTGAAGTTCCCGATCAAAGCCAAGGATTGGTGCTCGGCCAAACGGGCCTATATTGGAATTGGGGCCACCATGGTTGCCACTTTCATCATAAACTTCCCCCACTTCTTCAACTTTCGCCCTGTCAAAGTTGCAGGTGGCGGCTACCAGCTCCAGCTGACTGACTATGGTAAAAGTGAGTCTGCTCAGATGTACGAGTTCTGGATCCACTGCATGATTCTGGTTCTTGTTCCATGGGCCACGATCGCGTTCTTGAACGCAAGCATCATTTACGCAATCGTGAAACGCACCAAGTACATGCAGAGCCACGACAAGAACGCGACCACCAAGCCAGAACGCAACAAGCAGGACCAGCAGATGACGACGATTCTCTTGACCGTCACCTTCACCTTTCTCATCCTGCTTGCATTGCAGTGCATCACACAGTGCTTCTTCATGCTTGGCGATGGCAAGAAGAACGTTGACTGGGACCAGGAATCAGTCAGCATGGCTTTCGCCTTTGCAAAGATGGGCGTCGTCATCAATTCGGCAATCAACTGCTTCCTCTATTGCTTCACCGGGTCTGTGTTCAGAAAGGAACTGAAGAAGATGTTCGCTTTCAAAACCCCCCGCCGGTATGCTGCGTACATAAGCAACTCAAAGTCCTCACGGGGTGATACTACAGAAACCTACACAGAATCGAAGGCCTAA

Transcript

BRAKERMNPT00000012237

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9STS3	Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana OX=3702 GN=APC8 PE=1 SV=1
Q9UJX2	Cell division cycle protein 23 homolog OS=Homo sapiens OX=9606 GN=CDC23 PE=1 SV=3
A1A4R8	Cell division cycle protein 23 homolog OS=Bos taurus OX=9913 GN=CDC23 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005769 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan
PF04049 all species →	ANAPC8	Anaphase promoting complex subunit 8 / Cdc23	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR007192 all species →	Domain	Cdc23	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12558 all species →	CELL DIVISION CYCLE 16,23,27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031145 all species →	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0045842 all species →	Biological Process	positive regulation of mitotic metaphase/anaphase transition	Interproscan
GO:0051301 all species →	Biological Process	cell division	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERMNPP00000012237.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.