Genomic Location: scaffold107:192648...193565
NR annotation: KAI8488780.1, hypothetical protein Bbelb_335630 [Branchiostoma belcheri]
Species Nemopilema nomurai · all data for this species · gene families
| CDS |
| BRAKERMNPT00000014101 |
| Transcript |
| BRAKERMNPT00000014101 |
| Protein |
| BRAKERMNPP00000014101.1 |
| UniProt accession | Description |
|---|---|
| Q7RYW6 | Cysteine synthase 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cys-17 PE=3 SV=1 |
| P50867 | Cysteine synthase 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cysB PE=3 SV=2 |
| O59701 | Cysteine synthase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cys11 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004279 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00291 all species → | PALP | Pyridoxal-phosphate dependent enzyme | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036052 all species → | Homologous_superfamily | Tryptophan synthase beta chain-like, PALP domain superfamily | Interproscan |
| IPR001216 all species → | Binding_site | Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site | Interproscan |
| IPR001926 all species → | Domain | Tryptophan synthase beta chain-like, PALP domain | Interproscan |
| IPR050214 all species → | Family | Cysteine Synthase/Cystathionine Beta-Synthase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10314 all species → | CYSTATHIONINE BETA-SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006535 all species → | Biological Process | cysteine biosynthetic process from serine | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0019344 all species → | Biological Process | cysteine biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01738 | cysK; cysteine synthase | EC:2.5.1.47 | Cysteine and methionine metabolism | ko00270 | deepkoala |
Genes whose expression across the transcriptome samples of Nemopilema nomurai tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Nemopilema nomurai, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
