Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Pocillopora meandrina · all data for this species · gene families
CAH3042832.1 in PMEAN (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002385 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00226 all species → | DnaJ | DnaJ domain | Domain | Interproscan |
| PF07687 all species → | M20_dimer | Peptidase dimerisation domain | Domain | Interproscan |
| PF01556 all species → | DnaJ_C | DnaJ C terminal domain | Domain | Interproscan |
| PF01546 all species → | Peptidase_M20 | Peptidase family M20/M25/M40 | Family | Interproscan |
| PF00684 all species → | DnaJ_CXXCXGXG | DnaJ central domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR052030 all species → | Family | Peptidase M20/M20A family hydrolases | Interproscan |
| IPR036869 all species → | Homologous_superfamily | Chaperone J-domain superfamily | Interproscan |
| IPR001623 all species → | Domain | DnaJ domain | Interproscan |
| IPR011650 all species → | Domain | Peptidase M20, dimerisation domain | Interproscan |
| IPR001305 all species → | Domain | Heat shock protein DnaJ, cysteine-rich domain | Interproscan |
| IPR002939 all species → | Domain | Chaperone DnaJ, C-terminal | Interproscan |
| IPR002933 all species → | Family | Peptidase M20 | Interproscan |
| IPR036410 all species → | Homologous_superfamily | Heat shock protein DnaJ, cysteine-rich domain superfamily | Interproscan |
| IPR017439 all species → | Family | Amidohydrolase | Interproscan |
| IPR008971 all species → | Homologous_superfamily | HSP40/DnaJ peptide-binding | Interproscan |
| IPR036264 all species → | Homologous_superfamily | Bacterial exopeptidase dimerisation domain | Interproscan |
| IPR018253 all species → | Conserved_site | DnaJ domain, conserved site | Interproscan |
| IPR012724 all species → | Family | Chaperone DnaJ | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30575 all species → | PEPTIDASE M20 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016805 all species → | Molecular Function | dipeptidase activity | Interproscan |
| GO:0031072 all species → | Molecular Function | heat shock protein binding | Interproscan |
| GO:0051082 all species → | Molecular Function | unfolded protein binding | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| GO:0006457 all species → | Biological Process | protein folding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0009408 all species → | Biological Process | response to heat | Interproscan |
CAH3042832.1.Genes whose expression across the transcriptome samples of Pocillopora meandrina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Pocillopora meandrina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
