Species Overview — Pocillopora meandrina

CnidoSite currently holds 7 of the 15 data types it covers for Pocillopora meandrina. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

✓ 5,342 records

Predicted gene models with CDS / transcript / protein sequences

Open Gene models →

Functional annotation

✓ available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function →
InterPro by gene ID · Pfam by gene ID · GO by gene ID · KEGG by gene ID

Gene family (orthogroup)

✓ available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family →
Orthogroup browser

Bulk transcriptome

— not available

RNA-seq samples with expression values (TPM)

Open Transcriptome anyway →

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

— not available

Mass-spectrometry proteomics samples

Open Proteome anyway →

Epigenome

✓ 27 records

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome →
DNA Methylation · ATAC-seq · DNase-seq (DHS) · ChIP-seq

Metagenome

— not available

Host-associated metagenomic samples

Open Metagenome anyway →

Phenotype

— not available

Trait measurements with geo-referencing

Open Phenotype anyway →

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Open Paleobiology anyway →

Mitogenome

✓ 22 records

Mitochondrial genome record and gene annotations

Open Mitogenome →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

✓ available

Interactive JBrowse track for the assembly

Open JBrowse →

Assembly record

Assembly

Assembly name
PMEA_v1
Assembly level
Contig
Assembly accession
GCA_942486045.1
Assembled by
Genoscope CEA
Year
2023

Genome statistics

Genome size
331.15 Mb
GC content
38%
Scaffolds
252
Scaffold N50
4.75 Mb
Contigs
252
Contig N50
4.75 Mb

Annotation

BUSCO
Complete, single-copy 97.5%Complete, duplicated 2.3%Fragmented 0.0%Missing 0.1%
Protein-coding genes
32,095
Proteins
32,095

Identifiers

WGS accession
CALNXJ01
BioProject
PRJEB51619

Reference

Reference
Pervasive tandem duplications and convergent evolution shape coral genomes Genome Biology [link]

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See all Hexacorallia species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-23 11:54). If a data type is listed as unavailable for Pocillopora meandrina, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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