Assembled genome (size, level, N50, BUSCO)
Predicted gene models with CDS / transcript / protein sequences
InterPro, Pfam, PANTHER, GO and KEGG assignments
OrthoFinder orthogroups and TF / ubiquitin families
RNA-seq samples with expression values (TPM)
scRNA-seq datasets, cell atlas and marker genes
| Assembly name | Loph_1.0 |
|---|---|
| Assembly level | Scaffold |
| Assembled by | GCA_029204205.1 |
| Genome size | 531.06 |
| Scaffolds | 2858 |
| Contigs | 5755 |
| Scaffold N50 | 1614486 |
| Contig N50 | 438598 |
| GC content | 39.5 |
| BUSCO | C:96.7%[S:94.4%,D:2.3%],F:1.4%,M:1.9% |
| Protein-coding genes | 37484 |
| Proteins | 40679 |
| Chromosomes | - |
| WGS accession | JAPMOT01 |
| BioProject | PRJNA903949 |
| Submitter | Lehigh University |
| Year | 2023 |
| Reference | Genome assembly of the deep-sea coral Lophelia pertusa. GigaByte [link] |
Availability shown here is recomputed from the live database every hour (last built 2026-09-16 23:13). If a data type is listed as unavailable for Lophelia pertusa, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.
