CnidoSite currently holds 10 of the 15 data types it covers for Pocillopora damicornis. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.
Assembled genome (size, level, N50, BUSCO)
Predicted gene models with CDS / transcript / protein sequences
InterPro, Pfam, PANTHER, GO and KEGG assignments
OrthoFinder orthogroups and TF / ubiquitin families
RNA-seq samples with expression values (TPM)
Positive / negative co-expression edges
scRNA-seq datasets, cell atlas and marker genes
DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq
| Assembly name | ASM370409v1 |
|---|---|
| Assembly level | Scaffold |
| Assembled by | GCA_003704095.1 |
| Genome size | 223.48 |
| Scaffolds | 115 |
| Contigs | 53033 |
| Scaffold N50 | 25611475 |
| Contig N50 | 25941 |
| GC content | 38.06 |
| BUSCO | C:96.8%[S:96.7%,D:0.0%],F:2.2%,M:1.0% |
| Protein-coding genes | 30378 |
| Proteins | 25858 |
| Chromosomes | 14 |
| WGS accession | RCHS01 |
| BioProject | PRJNA454489 |
| Submitter | University of Miami |
| Year | 2018 |
| Reference | Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution Scientific Reports [link] |
Availability shown here is recomputed from the live database every hour (last built 2026-09-19 04:39). If a data type is listed as unavailable for Pocillopora damicornis, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.
