Species Overview — Stephanocoenia intersepta

CnidoSite currently holds 8 of the 15 data types it covers for Stephanocoenia intersepta. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

✓ 42,339 records

Predicted gene models with CDS / transcript / protein sequences

Open Gene models →

Functional annotation

✓ available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function →
InterPro by gene ID · Pfam by gene ID · GO by gene ID · KEGG by gene ID

Gene family (orthogroup)

✓ available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family →
Orthogroup browser

Bulk transcriptome

✓ 1 record

RNA-seq samples with expression values (TPM)

Open Transcriptome →
Dynamic Expression View

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

— not available

Mass-spectrometry proteomics samples

Open Proteome anyway →

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome anyway →

Metagenome

— not available

Host-associated metagenomic samples

Open Metagenome anyway →

Phenotype

— not available

Trait measurements with geo-referencing

Open Phenotype anyway →

Paleobiology

✓ available

Fossil occurrences and stratigraphic records

Open Paleobiology →

Mitogenome

✓ 23 records

Mitochondrial genome record and gene annotations

Open Mitogenome →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

✓ available

Interactive JBrowse track for the assembly

Open JBrowse →

Assembly record

Assembly

Assembly name
jaSteInte3.hap1.1
Assembly level
Chromosome
Assembly accession
GCA_965112835.1
Assembled by
WELLCOME SANGER INSTITUTE
Year
2025

Genome statistics

Genome size
625.82 Mb
GC content
39.91%
Scaffolds
1,151
Scaffold N50
53.34 Mb
Contigs
2,092
Contig N50
1.05 Mb
Chromosomes
13

Annotation

BUSCO
Complete, single-copy 98.4%Complete, duplicated 1.4%Fragmented 0.1%Missing 0.1%
Protein-coding genes
44,341
Proteins
41,409

Identifiers

WGS accession
CBCOSS01
BioProject
PRJEB84413

Reference

Reference
Chromosome-level genomes of scleractinian corals: gene prediction and functional annotation Scientific Data [link]

Other Hexacorallia species

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See all Hexacorallia species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-23 06:53). If a data type is listed as unavailable for Stephanocoenia intersepta, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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