Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Pocillopora meandrina · all data for this species · gene families
CAH3138992.1 in PMEAN (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004832 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21170 all species → | FAN1_TPR | Fanconi-associated nuclease 1, TPR domain | Domain | Interproscan |
| PF21315 all species → | FAN1_HTH | FAN1, HTH domain | Domain | Interproscan |
| PF08774 all species → | VRR_NUC | VRR-NUC domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011856 all species → | Homologous_superfamily | tRNA endonuclease-like domain superfamily | Interproscan |
| IPR014883 all species → | Domain | VRR-NUC domain | Interproscan |
| IPR049132 all species → | Family | Fanconi-associated nuclease 1-like, eukaryotes | Interproscan |
| IPR049126 all species → | Domain | Fanconi-associated nuclease 1-like, TPR domain | Interproscan |
| IPR049125 all species → | Domain | Fanconi-associated nuclease 1-like, winged-helix domain | Interproscan |
| IPR033315 all species → | Family | Fanconi-associated nuclease 1-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15749 all species → | FANCONI-ASSOCIATED NUCLEASE 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0016788 all species → | Molecular Function | hydrolase activity, acting on ester bonds | Interproscan |
| GO:0004518 all species → | Molecular Function | nuclease activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0008409 all species → | Molecular Function | 5'-3' exonuclease activity | Interproscan |
| GO:0017108 all species → | Molecular Function | 5'-flap endonuclease activity | Interproscan |
| GO:0036297 all species → | Biological Process | interstrand cross-link repair | Interproscan |
| GO:0070336 all species → | Molecular Function | flap-structured DNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15363 | FAN1, MTMR15; fanconi-associated nuclease 1 | EC:3.1.21.- EC:3.1.4.1 | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Pocillopora meandrina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Pocillopora meandrina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
