Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Pocillopora meandrina · all data for this species · gene families
CAH3148080.1 in PMEAN (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002191 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21385 all species → | ACCA_BT | Acetyl-CoA carboxylase, BT domain | Domain | Interproscan |
| PF02785 all species → | Biotin_carb_C | Biotin carboxylase C-terminal domain | Domain | Interproscan |
| PF01039 all species → | Carboxyl_trans | Carboxyl transferase domain | Family | Interproscan |
| PF00364 all species → | Biotin_lipoyl | Biotin-requiring enzyme | Domain | Interproscan |
| PF02786 all species → | CPSase_L_D2 | Carbamoyl-phosphate synthase L chain, ATP binding domain | Domain | Interproscan |
| PF08326 all species → | ACC_central | Acetyl-CoA carboxylase, central region | Family | Interproscan |
| PF00289 all species → | Biotin_carb_N | Biotin carboxylase, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029045 all species → | Homologous_superfamily | ClpP/crotonase-like domain superfamily | Interproscan |
| IPR049074 all species → | Domain | Acetyl-CoA carboxylase, BT domain | Interproscan |
| IPR011054 all species → | Homologous_superfamily | Rudiment single hybrid motif | Interproscan |
| IPR005479 all species → | Domain | Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain | Interproscan |
| IPR011761 all species → | Domain | ATP-grasp fold | Interproscan |
| IPR005482 all species → | Domain | Biotin carboxylase, C-terminal | Interproscan |
| IPR011762 all species → | Domain | Acetyl-coenzyme A carboxyltransferase, N-terminal | Interproscan |
| IPR011763 all species → | Domain | Acetyl-coenzyme A carboxyltransferase, C-terminal | Interproscan |
| IPR034733 all species → | Domain | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta | Interproscan |
| IPR013815 all species → | Homologous_superfamily | ATP-grasp fold, subdomain 1 | Interproscan |
| IPR000089 all species → | Domain | Biotin/lipoyl attachment | Interproscan |
| IPR001882 all species → | Binding_site | Biotin-binding site | Interproscan |
| IPR011053 all species → | Homologous_superfamily | Single hybrid motif | Interproscan |
| IPR013537 all species → | Domain | Acetyl-CoA carboxylase, central domain | Interproscan |
| IPR049076 all species → | Family | Acetyl-CoA carboxylase | Interproscan |
| IPR005481 all species → | Domain | Biotin carboxylase-like, N-terminal domain | Interproscan |
| IPR016185 all species → | Homologous_superfamily | Pre-ATP-grasp domain superfamily | Interproscan |
| IPR011764 all species → | Domain | Biotin carboxylation domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45728 all species → | ACETYL-COA CARBOXYLASE, ISOFORM A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0016874 all species → | Molecular Function | ligase activity | Interproscan |
| GO:0003989 all species → | Molecular Function | acetyl-CoA carboxylase activity | Interproscan |
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11262 | ACACA; acetyl-CoA carboxylase / biotin carboxylase 1 | EC:6.4.1.2 EC:6.3.4.14 EC:2.1.3.15 | Alcoholic liver disease | ko04936 | deepkoala |
Genes whose expression across the transcriptome samples of Pocillopora meandrina tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Pocillopora meandrina, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
