Gene detail

Detailed information of Clavulariidae_g13183 in Trachythela sp. YZ-2020

Genomic Location: ctg000268:7545...9542
NR annotation: no NCBI-NR hit recorded
Species Trachythela sp. YZ-2020 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Clavulariidae_g13183

ATGGTGGCCAGCGCCGGTCAAGCCGGGATCTCATCCGCCAAGTACCGGCTCCGTCGGTCGCTGCTTCTGCCGTACGGCGCCATCTGTGCCGCTACCCTGTTGTTCGTCGGCGCCTTGGCGCCCCTTGTCACCACAGTCGAGCGCCAGTCCAACCGTCTCATCAACGAGGACACACCGGCGCTAGAAGCCGGCTACCAGCTGCAGCGCGGCTTGGAACGCTCGGTCGCGTCACTGCGCGGCTGGGTGATGTTGCGGGAGTCCCGTTACAGGACCGAGTGGAAGCAGGCCTGGGACGAGGGAATACGTCCCGCCATGGCCGAGCTCGGCACCGAGGCGGGTGAGCCAGACAACGCAGTGATCGCATCGCTCAAAGAGCTACTGAACCATATCGCGATCGATCAGTGGTGGATCGCCGAGGCCGCCGAAGCGCCCGGGAACCGACCGGCGCACCATCTCGTCGATACCAGGATAGCGCCGATCATCGACGCCTTGTTCAGGTCGATTACCAGCATGATCGATCATGAGGGGGAACGAGTTCCGCGCCTTGCAGGTGTGACCTATCTCGGCCTGATGGCTGACTACCGCGGTTTTCTTGCGCGCTCGACGCGGCAATTTTCCGAGTTGATCACGCAGCCAAGCGGTCGCAAAGAGGAAGCTTGGCTAGCGTCGCTTCATGTCGCCGAGGCGCGTTTGGAGTCGCTTAGTGCTATCGCTCCCGAGCTTACTGCGCCCCAGCAAGAGGCCCTGGATTACTTGCTGCAAATGACGCCGGTCTATCGAAAATTCGGCCGGACCGCGATCAACCTGCGCCGCAGTCCCGATTGGAATCTCGCACTGTCGATCATGCGCAACGAGGCGGTGCCGAAGGTTCGGGAAGCCAAGAGGCTCCTAATCGGTATCATCGCCACTCGACGCAGCCAGATGAAAACCGCCTCCCAGAGCCTGGAGAAAACGATCGGGTGGGTCCTGATCGGCGGCACACTGTTGACCATCGCCATGATCGTCTTTGCAGGTTTCATGGCGGTGCGCATCACCAACGGTATAGCAAAACCAATCGAAAGACTGGCCGCGGGTGTCGACGCCCTGCGGTCGGGCGGGCTCACGGCGGGATTGCAGCCGACCGGCAGCGCGGAGTTCCGGTCTCTGATCCAGACCTTCAATTCCATGTGGTCTTCCCTAAGGGACTCACGAGCGGAGGTCGAGCAAAGGAACCAGCAGCTTGAAGCGGCGAACGAAGCCCTGCTTGATAGCAACCGCGAGTTGGACGACTTTGCCTACATTGCGTCCCATGACCTCAAGGAGCCGCTTCGCGGTATCCACAACTTCTCGAATTTCCTCTTGGAAGACTACGAGGAACAGCTGGATGAAGACGGGAAGGACAAGCTCAAAACCCTCACCCGCCTCACACAGAGGATGGAGACCCTGATCGATTCGCTGCTCCACTTCTCCCGTGTCGGGCGGCAGGACCTTGCGGTCGAAGCAACGGACCTGGATCGGATACTCGAAGAGGTCCTGGACACGCTCCATATCAGCCTAGAATCGGAGGCGATAGAGATCCGCCGAAACGGGCCGCTCCCGACCGTGACCTGCGATCGGGTCCGGGTTGCCGAGGTGTTTCGAAATTTAATCACCAACGCCATGAAATACAACGACAAGCCGCAAAAATGGATTGAAATCGGGGCGCAGACAGTCTCGCCGGAAAAGCGGCCATCGCCAGCCGCCGATGACGCCGACGCCGACGCCGACGCCGGACAGAGCCACCACGTGTTCCACGTGCGAGACAACGGCATCGGCATTCGGGAAAAGCATCAGGAGTCCATCTTTCGCATCTTCAAGCGCCTGCACGGCCGGGATAAATTCGGCGGCGGCACAGGCGCCGGCCTCACCATTGTCAAGAAGATCGTCGACCGACATGACGGCCGATTATGGATTGAATCGGAACACGGCGAAGGAACCACCTTCTATTTTACGCTTGGTCAAGGAGCTACGGTCTCATGA

Transcript

Clavulariidae_g13183

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00672 all species →	HAMP	HAMP domain	Domain	Interproscan
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR003660 all species →	Domain	HAMP domain	Interproscan
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR052162 all species →	Family	Two-component sensor kinase/Photoreceptor	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43304 all species →	PHYTOCHROME-LIKE PROTEIN CPH1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Clavulariidae_g13183.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.