Genomic Location: ctg000510:6709677...6725814
NR annotation: no NCBI-NR hit recorded
Species Trachythela sp. YZ-2020 · all data for this species · gene families
| CDS |
| Clavulariidae_g22065 |
| Transcript |
| Clavulariidae_g22065 |
| Protein |
| Clavulariidae_g22065 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18129 all species → | SH3_12 | Xrn1 SH3-like domain | Domain | Interproscan |
| PF17846 all species → | XRN_M | Xrn1 helical domain | Domain | Interproscan |
| PF18332 all species → | XRN1_D1 | Exoribonuclease Xrn1 D1 domain | Domain | Interproscan |
| PF18334 all species → | XRN1_D2_D3 | Exoribonuclease Xrn1 D2/D3 domain | Domain | Interproscan |
| PF03159 all species → | XRN_N | XRN 5'-3' exonuclease N-terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041385 all species → | Domain | 5'-3' exoribonuclease 1, SH3-like domain | Interproscan |
| IPR016494 all species → | Family | 5'-3' exoribonuclease 1 | Interproscan |
| IPR041412 all species → | Domain | Xrn1, helical domain | Interproscan |
| IPR027073 all species → | Family | 5'-3' exoribonuclease | Interproscan |
| IPR040992 all species → | Domain | 5'-3' exoribonuclease 1, D1 domain | Interproscan |
| IPR047007 all species → | Homologous_superfamily | 5'-3' exoribonuclease 1, D1 domain superfamily | Interproscan |
| IPR041106 all species → | Domain | Exoribonuclease Xrn1, D2/D3 domain | Interproscan |
| IPR047008 all species → | Homologous_superfamily | 5'-3' exoribonuclease 1, SH3-like domain superfamily | Interproscan |
| IPR004859 all species → | Domain | Xrn1, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12341 all species → | 5'->3' EXORIBONUCLEASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000956 all species → | Biological Process | nuclear-transcribed mRNA catabolic process | Interproscan |
| GO:0008409 all species → | Molecular Function | 5'-3' exonuclease activity | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004527 all species → | Molecular Function | exonuclease activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12618 | XRN1, SEP1, KEM1; 5'-3' exoribonuclease 1 | EC:3.1.13.- | Chromosome and associated proteins | ko03036 | deepkoala |