Gene detail

Detailed information of Clavulariidae_g2294 in Trachythela sp. YZ-2020

Genomic Location: ctg000052:1588366...1594346
NR annotation: no NCBI-NR hit recorded
Species Trachythela sp. YZ-2020 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Clavulariidae_g2294

ATGGATGGCCCGTCTTCTCCGAAACGAGTAAGTCTTGTTTGCGAAAAGCTTCTAAAAATGCTTTCTACGATTAAAAATTTGTTCATTTACAAGCTTAGggttttataaacaaattttattgacAAACAAGGCTTGTTTTTTGGGTccaatttttaattgtttgtaTTTGCAGATCAAACTGACGGAGAGTGTAAATGATTTGAAAAAGATGAATAAAGATTCGTTGCTAACGAAGTAAGTAAAGCTGCACTGATATAATCTGTTAACAATACATGTTTATATGTTTGTAGTTTGTATTTTTAAGTACATCCACTCTAAATTTTCGAAGATTGTACAAATGAATTCAGAATGTTTCAAGTTCACGCACATGATAATTGATAAACAAATAGCCACATAAATGTTTTTCtgaaatgtatataaaaatatataaattttaaacttCTTGATCCTTGGGGCCATACACATGTCCAGTTCCTGGTCACCCTAGGGCATAGCTTGTGAAATCCTGCTGGACCCTTGATTCCCCCCTGAAACAAACCATATATTCTGATGCATTAATAGCACATATTTTATGaagggtgggggttggggttgaAATATAATGCCCCCGGAATACAACGGAAGAAAActgacaacaaaatttatatCTAAGTTGTCCCACCCACTATTTTGGAATAAGCTGATTGTGCTTATCTTTGTTTACAACAGGTTTCAAGAGCAAGATAAATATATTAATCATCTTGAAGAGAAAATGAACCAGACTTCAAATGGTTAGTACAAGAACTATAAATGTAGCAGGCTAGAAATATTGTAGTAATATACATTTTACTAGGGGGGGGCAAGATGATATTTTGGGAGGCTTCCCCTTTTTGAAATTCACATTTCATTATAAATATAAAGTTCTTTCTAGTCTGAGTAGCATGTTTTCCTTAATTTAAGGATTCTGTTGTAAGATACATCCTAACGAAATGTAGCTTGCCTTGGTTACACAGCCTCTGTTATGTGATTGAAACCTTGTAGCGTTTCATGAACCCATACCAAGACTTTAAAGCCAATGTCTAAACCCTAAAGTAGAAATAAACTGTAACAAAGGCAATGTACTTTTCCAGAAAGGTGTTTTTTTTCCAATACAGTCAAACTTCTAACTAATGGacatttgaaatatttccagttAGAGTCCGACCTTAATTAGAGATATTTGTTGGATAGATTGCCCATTAATAGTAGGTCCAACTGTACTCTTGTTGACTTGAGTTTGTTAATTTGGCATATGTAGCTGGTGAACTTACATCACTTCGTGAGTCGGAGGAAAAGCTAAAGTTGCAACAGCAAGAATCAACTCGACGCGAAAACGTTCTTGTGATGCGCTTGGCGACCAAGGAACAAGAAATGCAAGAACTACTGGTGAGATATTTATATGGAACACTTATCTCCTTTTCAAATTCGGCTGTTGCAAGTACATGATAAGCTTCCCAAGTTTGCAAGTACTAGCGGTCTTCAATGACACTTGAACTGCACAGCTGATTGAGGTTCAGCCTATTCAACAGCAAGCATTGTCTCGGACAGTTTGTCTAGGTGAAGTTGTGTGAAAGTTTGGGACAAAAACGGTGAGATCTGAACAATAAATTCTGAACTTGTTAACTAATTTGTTAACTAACTGATAAGCATTAATCGGTGAGGGCTGAACTGTCTATCTAACTTGGacatttatatggttatgtctgAACTATCTAACTGTAAATCTGGTTATTTTGCTCAAATGCAAGAATTATGTTGGATCCATAACTCCATTATCTCATCAGAATAGCAACATTCTCTTGCATTTGCCAATAAGCTAGATTTGCATAAAATAGCTTTTTAAAAACTTCCTAAAACAAATTATGCCAttgaaaatggccgaaaatatATGAGCAATGAACAGTTGAAAATCTACTGGAGGACAATAGTAGCGATGGTTAAATTAAAGCATCCAATTGAACTGAACATTTTTTAAATGCCTATCAAAGAACATTCTGGTGAACTCTGAACACTATATAGCGGTCATTTTACAATGAATTCCGGACATTAAACAAATGAACTTGAGACATTATAAACTTTATATTAAACCAATAATGTAGTGCTTAATAGTGGGTCATAAACAATAGTAGCATAAAGTGTTTAATTTAGAAAGCTAGTGTTTATATTTACTATACGATAATGTGTTGTTAAATCAACAACTTTGCTTGTGTTTTAAATGGTACGAGAATAATATTCAACAGAGTAATCATAACTCATAACAAAAGTGGTTtctagatctatcagttctattgTTTGGTAAATTGAAACTGTAAGCACTCACAACTGTGagacaaaattataatcagacaactgcatattaccaTAATCGAATTGGAGGTGCAGAGATGAGAGGGACGTGTACTATCTCCTTAGTCACCAACACCCTATATATTCTGCCTATTGCACTCTGCTCTACAGCTATGGCCCATGTCTCACTTCCATATACAATCACACATCTCAGGCACATTTCATATAGCTTTGCCATAAATGGTGTATCATTATTTAACTTCGTCCACACACCCTCTCCTTACATTCAGCTCTCCTATTTTCTCATGCAACACATCTCCTAAGTTACAAACCTTTTGCACCCCATTTCATAGCTTTGTACCCTCATCTACATCCTTCTGATCCACATAGTATGTGTAGCTACACTAGGGGATGGGGAGGGTAGTGGAAAAGTCTTTTCTCTCCTTTCCTTTCCCTCGCGTCTTTTCTCACGTCCCCTCCACGTCCCCTCCTCTCTCAAGCTCTCCTACACATGGTGTAACCCCCACTGTTGCATCACTAGTCCAGATAGTCTCTGTGATCTTGTAAGGGCTTAATTAAGTATATAGACAAATTTAGGTAACACTTATTTATAACATTGCTATCCATTTCAAATTTGGATAACTCTCATGAGTTCCAGTCTGTGGAAGCATATTCAATAAAGGTAACTCACTATTATGGAATTATGCAGTAATTGGGTCTTCTGCTTTTCCAGAGGGGTGCATCATTGCTTTCCATTGCATTTACCATTGGTAACCACATCTTCTTGGAGGGATAGGTGTTGAAGATCACATGGGTTGAGGGGTACTCCATTGCACTCCTATCCCTAAATTTTCCATCCTTGGCCCCCCTTAAATTGTGACTTAGATTTCCTTTCTCGTTTAGACCCAAATCCATGACTTAAAACAAGCTCAGAATCCTGCAGGTGCACAGCTTCGTTCAACTCTACTTGATCCCGCTGTAAATATCGTCTTTCAAAGAATGAAATCTGAACTAGATGAAACCAAGGAAAAATTGGAACAGGCACAAAATGACTTGAGTGCGTGGAAGTTCACGCCTGACAGGTACAATACTGCAAATTTCTTGTGTGTGAAATTTATATATCAGGTTACTGGGTTGTGCAAATTTTGATGCTTTATATGTTGACAGTTCTTGTAAATGTGcttgcaaaaatataaatttgcaGCTAACACGCGTAGCAAATTGCACAGCAACGCCTGAATACTTTTCTGGCTATTACAAGCACGCGCTCAAGAGATATTTTACAACTTTTCTGTATCCATCAAGTTATAACCGATAACGAGAGCTATATACTCTCTAACTCGATTTGTGTTTTTATATCGAGGGCGTTTGCTTTATGGCGAGAGTATTTTTAAACAGCGATTCGTTTCATTTTAAGTATATGAAGCTGAGCTTCGTCAATTATATAAAGGTGAACAATTCCTGGCCTCCAGCTTCAATTTGCTTCAAAGATTAGAAACGGTGTTGAAAGGTTTACCCTgcttatatatacatataagttTTGCATGAAATCGAGCCTGAAATGAAATTGAAGACGGAGCAAAGAAACATCTAACGAGCTGCTCTATCGTTGCGCAAATGTTAATACAGCCTGAATGTTGTATAGTGTTACAGGGAAAAAGTTGATGGCAAAATGCCGTATGTTGATTCAAGAAAACCAGGAACTTGGTAGACAGCTTTCGCAAGGTCGTGTAGCACAGCTTGAGGCGGAGTTGGCTTTACAGAAGAAATACAGTGAAGAACTCAAGACCAGTCAAGATGGTAAGTTTGTGTTAAGATTGTAATAAAAGTTTATAAATTAAtcctttttctaaaactttcaccctTGCTCATAATAGTTTTTTATCAATCAAAATCGCTTATTCAAGGATTGTTCAAAggtataaattattttactagcaacttttgtaaaatatgtaaaactgtccgaaacgttgatagtaaaataatttataccTTTGAACAATCCTTCAATAagcgattttgattaataaaaaacttttataaattaactttatCTATAGAGGATAGCACTAAGTATGTAAATAATGAAACTAACAAACCAGGCAGTGGCCATGTAGTTATATACTAGTATTGCTGCATGGCTATGGTATTCCGTGCATAGCCTTAAGGCtctttccactcatcgcaaaaccaactggCAAACTCGAGTTCGtgtatgtaattaaaataaactgtcgagcattgtgattggatgaaagtactcgcagcgagcttgcgagttggtttttgcgacgaatggaaaagagcctttagtgtGTAGTCTAATTTACATGAACATATAGCTGTAGTAACATTTAGATTGCACTTTAAAGATTAGTTTGTACTTAAGTTGTTCATTTGTTTACTAGTACAAGTTGTATAGGTTGTATATAGTCGCCTGCAGAATTTAGGAGGAGGTGTTTTTTCGCATAGTAGTTAGGACTATCCATGGTAGTTAGGGCTATCCGGCCACCTATAGTACAATATAATTCTTATCGTAATTCTTATCAGTATACTCTTGGTATAAAACTGAACAGCTGAACCACATGATCTTCTTTCTTTAAACAAAGATAAACACTTTTCAACATAATAATTCCTTTAATTCTCATTCTGTAGAACTCAATGAATTTGTGATCCAACTGGACGAGGAGGTCGAAGGAATGCAATCGACAATCCTGACCTTACAACAACAACTGAAAGGCGTTAAAAATGAACTGGTGGAGGAGAAACATAGCGGTGAAAACCACGTAGAACAGATTCGTATCTTGGAACGAAATTTAGACCTGGCTAGAACTCAACCGCCAAGCCCTGTGGAGGGCGGAAAGCCGACTACAGTTGAAGAAATGCAATGTGATGCTATTGATAGGACAGAAGCTGAAAACCCGGGGTCTGGGCACGAAAATATGGAGACCGAGTGCAGCAATATAGAGCCTGGGGAGGAAAACATGAagccagaagacagggactccAAGCTTCAGAGTGTTGAACCAGAGTTGGACAACGTGAAGCCAGATGTTGAAAACGTGTTCTCTGGGTACAAGAACGTGTCTTCTGAGGCAGAAAATGTACAACGTGAAGTCAGAAACGTGCAACCAGAAGTCAAAAACGTGATCACAGAGGATACTAACGTGTCCTCGGGAGTAAGGAACGTGAACCCAATGGTTGGAAACGAGAAATTTGAGACAAACAACGCGGTATCCGCGGTTGAAAACGTGACGTTTTGGAGCGAGAACGTGCGCTGTGAGTCCGAAAACGTGCATCTGGGCACGGAAAACGTAAAGTCCAACACGGAAAACGCAAAGATCAATACGGAAAACGCAAAGTCCAACATGGAAGATGTGCCATCAAGAACCTTTGGAAGAGTCAGTCCGTTTAGTTCAGCCCTTGAACCAAATCTTCGGAAATCGGCCGGTACTCCCCCCTGCTCAACGACTTTCTCCATCAGCCAAATACTTGGGGAACCCAAAAGGACGCCCTCGCCTGACATTCCACCGGGGGGTGATGCCATTGTGACTAAGATTCCTTACATAGGGGGCTACACTGACTCAAAAGGGGAAGACCATACTTTAAGGACCGAGGACTCTGGGATACTGAACGGGGAGGCAAAGGACGGTACCCAACCCTTAGTGACGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17098 all species →	Wtap	WTAP/Mum2p family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033757 all species →	Family	Pre-mRNA-splicing regulator WTAP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15217 all species →	WILMS' TUMOR 1-ASSOCIATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0080009 all species →	Biological Process	obsolete mRNA methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22824	WTAP; pre-mRNA-splicing regulator WTAP	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.