Gene detail

Detailed information of Clavulariidae_g2333 in Trachythela sp. YZ-2020

Genomic Location: ctg000052:1998757...2004033
NR annotation: no NCBI-NR hit recorded
Species Trachythela sp. YZ-2020 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Clavulariidae_g2333

Transcript

Clavulariidae_g2333

atGTCCACAGAAGCTGTTCTTTTAAAGAAGAAATCACGTCGAAATTTTCGCAGAAAGAATTTAGAGGACGAACATGAAGAGGAAGTGCAAGTCGAAGAGTCCGCAGAGCAACAAAAATCCGAAGAAAAGgcagaacaaaaaccaaaaaaatCTTCAAAACCCGCGCCAAAAACGTTGCTAAGTTTCGACCATGATGGTGAGGAAGATAGCGGTGAAGTGTTTAAAGTTAAGAAGTCTAAGGAAAGCCGTAGGTTGTCAAAACAACGTGTTAAAGCaaagaaaactaaagaaaatGAACCAGGAGATACATTTCTAAGCTCTACAACAGAGGCAGTAAACGATGACAAATTAGAAAGTTTGAGGGAAGAACTATCAAATTtaggtggtgatgatgatgatggtggagGAGAAATGGCAGAAAATGAAGGAGAAAAAGTAATTCAAAGTGATGGAATTATATTTAAACCTTTACGTGCAAACCCAAGTAAGGATACATCTTTTCAAATTCCTGACGCGGCAGCTATTCATGCAGCAAGGAAACGAAGAGAAATGGCTCGACAGATGGGTTCAGATATTATCCCAGTTGACGATACTGATAGATACAGTGGTAGGTTTGAAAATACAGATAAATCTCGGTTAATACGTGAAGACGATAACGATCATAGTGATGAAGATCCGGATACACCGCTCGGGTTTGGGACAAGAAAGTCAAATCATCCAGGTATGCAAAGACGACTTGAAGTTGAACAAGCGCTTGCGAAAGAAAGTGATGAGGATGAAAAAAGCGAGGGAGAAGATGATGCGTTGAGGAGGTTTGAAGAAGAACAGATACGGAAAGGAGTCTCGATTCCGCAAGCACAACAAGAGGAGGATACTACATATCAAATGTATGTAACACAACAGTATCTTTATGGTAATAGTGACATTGACCCTAACTATACCCAATATACTAAACATGGGGTACCTGTGCCTGGCTACCCAAGTTATCCACCAACGTCATTAAACACTGTAACCATGGATATGGTTTGGGAGAAGATGAACAATCGTATTGTCTCATTACAAGAGGTCAATAGAGGTCGGCGCTTGGAGAAAGAGAAAACGATGTCACACATGGAGTCATGTGATACAAGTATTACATCGTTAGAGAAACAGACGAAGGATGCTGAGGGTCGTTATGGTTTTTTTCAGGAGATGAGGGGGTATGTCAGGGACTTGATTGAATGTCTTAATGAAAAGGTGCGTCAGTAGAATGTCAACGGTAACTTGCCAGGGGTCATGTTGCAGGGGCTGTGTTGCAGAGGTTCTGCATGCACTTGGATTTGTGGATTTGGCAGCTGTAAAACCAGAATGTGCAACATGTGTTGTGCAATGCGAGCAAAAACATAGTTCATAGGTAGATTTAGGATTTGGGTGTACACCCTCCTCAAAGCAATGATGTATTCCTAGAACCCATAAGTGTGCCAAATGAACCTAGATTGACAAGCTCAATGTTATTGATTAGTTTCAATATAATAGATAAATTTATATGTATTTGCATAAAAATACTATCTTGTCTTCCATTttggtatttaaattttctGTCAGAAATCAATTACTGAAGACTTATTGATGACTCAGACAACAGGGCAAATTAGGTCCTAAATTGAGTCCTACCTATGCATAAATACAGTAATACTAGTACCTCATGATTATGAGACAAACATAATTCCAATATTAAGAACCCACAGGTCACTCGTGTATCTATATATCTACTTGATTCCTGCATCCACCAAAGATAATGAAATAGTGCTATTACATTTTGGAATTGTAGGTTCCTGTTATAGAAGGCTTGGAATCTAGAATGCATTCATTATTAAAAGAAAGAGCCGACAGATTGATTGAAAGACGTCAGAAAGATGTCCAGGATCAGGCAGAAAACTTTGCTGCTGCACAAACAGGTAGTGTAGTTATTCCATAAACTTGTCAGAATATATGCATTCTATTTGCTCCAAGCTGTAGCTGAAGCGAGAAAGCTTTGACATGCCTGTTGCATAATTTTTAGTGTCTTGTTGCAGGGAAATCTGTGCAAGTAAAGTCAGAATTTGATGAATTTGGTCGAGATAAGTTGGCATACGTGGAGCAAGCCAAGCAAAGAAGAGCAGTCGAAAGAGAAGCAAGAAGAAACAGAAGGAGAAAGGAAAGAGAAGCAGCCATGTTGAAAGAGGATGACTCCAAACAATATCATGAAGGATTCTCCTCTGATGATGAAGAAGGAAGTGGTGAAGTTTTAAGGTTCAAAAATGAATCAGGTATACCATTGATTGCTTCACTTTGACAATTTTGTTGTCAAATTCATTTTGGGCCTTGTTATCCAATGGCTATTTTTGGGACTTTGGAGGCTTGGCAACTCCTACTACTAGATCAAGCAGGATCTATCCCTGAATAGGATGTTTCTTTTGTAGAAAAGATAATGGGTGAAGCAACAAAGATATTTGAAGATGTTTTAGAAGACTTTGTCAATATCAAATTTGTTATAGCAAGATTTCAGCAGTGGAAATATGGCTTCTCGGAAACCTACAAACAGGCATTTGTACATTTGTGTTTGCCTAAACTGGTTTTACCATTTGTCAAAATTCAACTGTTGGATTGGAATCCACTTATGGTAGTTATTCATTTATAGATTGTAATCAATGAGATAGAATTGTGAACAATGTTTCTTACTAGTCTTTTTTTGTAAGTTGCAGTCTTGAAACACAACATGTTTTCCAGGTCATCCAACAGGTCATCCGTCATCATCATTGGACAGAACACCAGACGAACCTGCAAACTccttataattatattttttgtgcATCTTACAGAAGGGATGTAAAGATTTTGAAGAAATGCAATGGTTTGAAGATGTGATGTTTTATGGGTTCAAAGATAATTCCTATGATCCAGATGATGAAGATACAAATTTTATTCCACGCTTGGCTGAGAAAGCTCTTGTGCCCAAACTAACAGGTTACTGTCTCTTCACTGTTTTATAGGTTATAGTCATGCAGACTATCCATAGACCTAGAGATTCATTGAGGAGAGCAAAGATGTGAAACGTGTAAATCTGATGTGATATGCCAATATACAAGTTGATATGCCATCTTCAAGTCTTTATAATGTTAACTTCCATTTGAATTTTTAGGTCTTCTTGAGCATATCTGGGATCCGCTCTCATTAAAACAGACTGTATTTGCTGTGAATCTTGTCAAACGTTTGGTGCTTGATTATCCAACAGTTTCTGCAGAAAAGAAACATACACAGGTAGAAATAGTTATCAATATATCAAATTTTGTACTGTTGTAATCATGCTGGTCACTGCAATATACAATCTCCAAGCAGCCATAACCACATTGGTTGTTTGGTAAATAGTATTGCTAGAGTAATTCAGAGTAATCCGGAATCACATTTCATCAATAATTGTGTCTTCCTCATTAACCTCTGATACATTTGATCTACACTTTAATCTCAACAAACTTACTAGCACTTTATACTAAACTTTTCTCTTCTTTACTACCTTAATACTTCTGCTTACGTCATCCATTTTATTTTCAGGAGTTATTTAACACTGTCATTACGAGAATTAAAAAATGCATGAATGATGATATTTATGTTCCTCTTTATCCAAAATCGTAAGTAAACCTGGCTGTGTTGATGTATATAGCCTGTGAATAGTGTGATGCAACAGTGAACATCATTCCACTTAATTATAAAAGGCAAACAAATACTCTTATTAACCTAGCTTACTTGATAAGAAGTCTCTTGGAGGAGAAACATTTGTAGAACGACAATTCTGGAGTTGTTTAAAGGTTTGTAAAAATACAGTAAACTACATTATCCAGTAAAAAATCTCACTATATACTTGCTTCTCACATTCTTTATGTTTTGAAACATTACTTACTGTAGTTATTGGGTAACATATTTCTGTGGCATGGCTTAATCTCCACTCCCAAGTTACAAGAATTAGCTGTAGATGGTTTGCTTAACCGGTATCTCTTGATGGCTCTTCAACATTCAGCTGGAAAACATTATGAAAATGTTGGAAAATGTCAAGCTGTAAGTACAGTATACGATTGAACCATATGATTGAACCAATTCAGGCAGTCAGTTAGTCAACCATTCAGTCAGTCAGTCAtaaacattttctatttttagatTGTGACAGTGCTTCCACGTGATTGGTTTGAAGGATCAAAGAGGACAACATTGGATTGTTTGGGTTCATTCTCTCGCTATCTGGAAAGCTTGGCTAATTCTCTGAAATTGAAAGCTGAGGGTTCCACTCCTCAAGAGAAGAAGAAAGCTAGGTAAAGTTCTGGGAAAGTTATAACCGTGGTTTGCAACTATTCTGAAAAAATATTGTCTATTCGCACataaacttcaatgtttgtcaaCAGCATTTGAAGGTGGTTTCAATTAGCTCAGTCAATAAGCTAGAAGTTAGGTAAATATGATTTACCTTCAgatcaaatgctcttgacaaacatgaaaCTCTGTGTCATGTGTGCatagaaaatgtttttattatataagtatagagatttctGTGCAGTAGAAAGTTGAAATAGAAATCATATCCTCACGGCGgacaatatttttcacatgtgaaaatgatcATATCAGTGTTTTGATTGGTCAGTGTTTTCCcgctcaaaattgtaaacatggtgGCCAGTTTTAGCAaaatcaccgaagtgagagtGAACTATAATAAAGTGACTATATTATCATCATGGAATACacaaggtttaaaatacttaagataaacctCTTTGATTGGAATTccagcaagaaaatgaagaaataaacggtcagaaatctgtttttgagaCTTCACTTGCATGTTGTTCGCTGAGAGTTTGTCAGTGTCACatatttatctctatacttatataataaacaaagtacttcatggttggttcgtttgtacaatttttattatttactcgtgAAGGATTGTGTActagatttaaatcagtgatttgcccctcgtccttcacaactcgtaaataaaaatcaTATGCACTcgccaaccatgaagtaatctatatttATCTGTAACTGTTCATTGTTAGATGCAAACAACAGTACTCTATGTCACACATGACTATTACaggctgcgagcaggctaggcTTGTTGCCTTCAATGGTAATGCTCATTGGTGTTTGTTTCATTTTAGGGCTGCTATCAAAAAAGTAATCTTGATGATGGTGCAAATCAAAGCTCTCGATATGGcagaaaatttcaaaatggctccATAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07842 all species →	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012890 all species →	Family	Intron Large complex component GCFC2-like	Interproscan
IPR022783 all species →	Domain	GCF, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12214 all species →	GC-RICH SEQUENCE DNA-BINDING FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13211	GCFC; GC-rich sequence DNA-binding factor	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.