Genomic Location: not available for this species
NR annotation: KAG1713846.1, Glyceraldehyde-3-phosphate dehydrogenase [Nymphon striatum]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P29272 | Glyceraldehyde-3-phosphate dehydrogenase OS=Cereibacter sphaeroides OX=1063 GN=gapB PE=3 SV=1 |
| P51009 | Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus OX=281 GN=gap PE=3 SV=1 |
| P50321 | Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=cbbGC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002620 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02887 all species → | PK_C | Pyruvate kinase, alpha/beta domain | Domain | Interproscan |
| PF02800 all species → | Gp_dh_C | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | Domain | Interproscan |
| PF00224 all species → | PK | Pyruvate kinase, barrel domain | Domain | Interproscan |
| PF00044 all species → | Gp_dh_N | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001697 all species → | Family | Pyruvate kinase | Interproscan |
| IPR020831 all species → | Family | Glyceraldehyde/Erythrose phosphate dehydrogenase family | Interproscan |
| IPR020830 all species → | Active_site | Glyceraldehyde 3-phosphate dehydrogenase, active site | Interproscan |
| IPR006424 all species → | Family | Glyceraldehyde-3-phosphate dehydrogenase, type I | Interproscan |
| IPR020828 all species → | Domain | Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain | Interproscan |
| IPR015795 all species → | Domain | Pyruvate kinase, C-terminal | Interproscan |
| IPR011037 all species → | Homologous_superfamily | Pyruvate kinase-like, insert domain superfamily | Interproscan |
| IPR040442 all species → | Homologous_superfamily | Pyruvate kinase-like domain superfamily | Interproscan |
| IPR020829 all species → | Domain | Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain | Interproscan |
| IPR015793 all species → | Domain | Pyruvate kinase, barrel | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR015806 all species → | Homologous_superfamily | Pyruvate kinase, insert domain superfamily | Interproscan |
| IPR036918 all species → | Homologous_superfamily | Pyruvate kinase, C-terminal domain superfamily | Interproscan |
| IPR015813 all species → | Homologous_superfamily | Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43148 all species → | GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000287 all species → | Molecular Function | magnesium ion binding | Interproscan |
| GO:0004743 all species → | Molecular Function | pyruvate kinase activity | Interproscan |
| GO:0006096 all species → | Biological Process | glycolytic process | Interproscan |
| GO:0030955 all species → | Molecular Function | potassium ion binding | Interproscan |
| GO:0004365 all species → | Molecular Function | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006006 all species → | Biological Process | glucose metabolic process | Interproscan |
| GO:0016620 all species → | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0051287 all species → | Molecular Function | NAD binding | Interproscan |
| GO:0050661 all species → | Molecular Function | NADP binding | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
Cxam_g10609.t1.Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
