Genomic Location: not available for this species
NR annotation: MBN2492127.1, peptide chain release factor N(5)-glutamine methyltransferase [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q727D9 | Release factor glutamine methyltransferase OS=Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough) OX=882 GN=prmC PE=3 SV=1 |
| Q748B2 | Release factor glutamine methyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=prmC PE=3 SV=1 |
| Q8KCD5 | Release factor glutamine methyltransferase OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=prmC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005213 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05175 all species → | MTS | Methyltransferase small domain | Domain | Interproscan |
| PF17827 all species → | PrmC_N | PrmC N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR007848 all species → | Domain | Methyltransferase small domain | Interproscan |
| IPR002052 all species → | Conserved_site | DNA methylase, N-6 adenine-specific, conserved site | Interproscan |
| IPR019874 all species → | Family | Protein-(glutamine-N5) methyltransferase, release factor-specific | Interproscan |
| IPR050320 all species → | Family | Protein N5-glutamine methyltransferase | Interproscan |
| IPR004556 all species → | Family | Methyltransferase HemK-like | Interproscan |
| IPR040758 all species → | Domain | Release factor glutamine methyltransferase, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18895 all species → | HEMK METHYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0032259 all species → | Biological Process | methylation | Interproscan |
| GO:0006479 all species → | Biological Process | protein methylation | Interproscan |
| GO:0008276 all species → | Molecular Function | protein methyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02493 | hemK, prmC, HEMK; release factor glutamine methyltransferase | EC:2.1.1.297 | Translation factors | ko03012 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
