Detailed information of Cxam_g11255.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: MBN2489302.1, phosphoribosylformylglycinamidine synthase subunit PurS [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families

 Sequence
Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O28339Phosphoribosylformylglycinamidine synthase subunit PurL OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=purL PE=3 SV=1
Q97BD5Phosphoribosylformylglycinamidine synthase subunit PurL OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) OX=273116 GN=purL PE=3 SV=1
Q9HJA4Phosphoribosylformylglycinamidine synthase subunit PurL OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=purL PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004624 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02700
all species →		PurSPhosphoribosylformylglycinamidine (FGAM) synthaseFamilyInterproscan
PF00586
all species →		AIRSAIR synthase related protein, N-terminal domainDomainInterproscan
PF02769
all species →		AIRS_CAIR synthase related protein, C-terminal domainDomainInterproscan
PF18072
all species →		FGAR-AT_linkerFormylglycinamide ribonucleotide amidotransferase linker domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003850
all species →		FamilyPhosphoribosylformylglycinamidine synthase subunit PurSInterproscan
IPR010074
all species →		FamilyPhosphoribosylformylglycinamidine subunit PurLInterproscan
IPR036676
all species →		Homologous_superfamilyPurM-like, C-terminal domain superfamilyInterproscan
IPR016188
all species →		DomainPurM-like, N-terminal domainInterproscan
IPR010918
all species →		DomainPurM-like, C-terminal domainInterproscan
IPR036921
all species →		Homologous_superfamilyPurM-like, N-terminal domain superfamilyInterproscan
IPR036604
all species →		Homologous_superfamilyPhosphoribosylformylglycinamidine synthase subunit PurS-like superfamilyInterproscan
IPR041609
all species →		DomainPhosphoribosylformylglycinamidine synthase, linker domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43555
all species →		PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURLInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004642
all species →		Molecular Functionphosphoribosylformylglycinamidine synthase activityInterproscan
GO:0006189
all species →		Biological Process'de novo' IMP biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Cxam_g11255.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.sequence table not available–
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.sequence table not available–
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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