Genomic Location: not available for this species
NR annotation: MBN2489777.1, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| A1AV42 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=mnmG PE=3 SV=1 |
| Q746Q4 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=mnmG PE=3 SV=1 |
| B5YJL3 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=mnmG PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0014477 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13932 all species → | GIDA_C | tRNA modifying enzyme MnmG/GidA C-terminal helical bundle | Domain | Interproscan |
| PF21680 all species → | GIDA_C_1st | tRNA modifying enzyme MnmG/GidA C-terminal helical domain | Domain | Interproscan |
| PF01134 all species → | GIDA | Glucose inhibited division protein A | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002218 all species → | Family | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related | Interproscan |
| IPR047001 all species → | Domain | tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain | Interproscan |
| IPR004416 all species → | Family | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG | Interproscan |
| IPR020595 all species → | Conserved_site | MnmG-related, conserved site | Interproscan |
| IPR026904 all species → | Domain | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, C-terminal | Interproscan |
| IPR036188 all species → | Homologous_superfamily | FAD/NAD(P)-binding domain superfamily | Interproscan |
| IPR049312 all species → | Domain | tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal, N-terninal subdomain | Interproscan |
| IPR044920 all species → | Homologous_superfamily | tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain superfamily | Interproscan |
| IPR040131 all species → | Domain | MnmG, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11806 all species → | GLUCOSE INHIBITED DIVISION PROTEIN A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0002098 all species → | Biological Process | tRNA wobble uridine modification | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0008033 all species → | Biological Process | tRNA processing | Interproscan |
| GO:0030488 all species → | Biological Process | tRNA methylation | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03495 | gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
