Genomic Location: not available for this species
NR annotation: MCB0344126.1, efflux RND transporter permease subunit [Bdellovibrionales bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q8FWV9 | Efflux pump membrane transporter BepG OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=bepG PE=1 SV=1 |
| Q8G2M6 | Efflux pump membrane transporter BepE OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=bepE PE=1 SV=1 |
| P24181 | Multidrug export protein AcrF OS=Escherichia coli (strain K12) OX=83333 GN=acrF PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010772 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00873 all species → | ACR_tran | AcrB/AcrD/AcrF family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027463 all species → | Homologous_superfamily | Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains | Interproscan |
| IPR001036 all species → | Family | Acriflavin resistance protein | Interproscan |
| IPR000731 all species → | Domain | Sterol-sensing domain | Interproscan |
| IPR004764 all species → | Family | Multidrug resistance protein MdtF-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32063 all species → | - | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0042910 all species → | Molecular Function | xenobiotic transmembrane transporter activity | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0015562 all species → | Molecular Function | efflux transmembrane transporter activity | Interproscan |
| GO:0042908 all species → | Biological Process | xenobiotic transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K18138 | acrB, mexB, adeJ, smeE, mtrD, cmeB; multidrug efflux pump | - | Antimicrobial resistance genes | ko01504 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
