Genomic Location: not available for this species
NR annotation: MBN2492149.1, excinuclease ABC subunit UvrC [Planctomycetota bacterium]
Species Cassiopea xamachana · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q3A734 | UvrABC system protein C OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=uvrC PE=3 SV=1 |
| B8JDG6 | UvrABC system protein C OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) OX=455488 GN=uvrC PE=3 SV=1 |
| Q2IQH0 | UvrABC system protein C OS=Anaeromyxobacter dehalogenans (strain 2CP-C) OX=290397 GN=uvrC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0015366 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08459 all species → | UvrC_RNaseH_dom | UvrC RNAse H endonuclease domain | Domain | Interproscan |
| PF02151 all species → | UVR | UvrB/uvrC motif | Family | Interproscan |
| PF01541 all species → | GIY-YIG | GIY-YIG catalytic domain | Domain | Interproscan |
| PF14520 all species → | HHH_5 | Helix-hairpin-helix domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001162 all species → | Domain | UvrC, RNAse H endonuclease domain | Interproscan |
| IPR004791 all species → | Family | UvrABC system, subunit C | Interproscan |
| IPR035901 all species → | Homologous_superfamily | GIY-YIG endonuclease superfamily | Interproscan |
| IPR047296 all species → | Domain | UvrC/Cho-like, GIY-YIG domain | Interproscan |
| IPR001943 all species → | Domain | UVR domain | Interproscan |
| IPR000305 all species → | Domain | GIY-YIG endonuclease | Interproscan |
| IPR010994 all species → | Homologous_superfamily | RuvA domain 2-like | Interproscan |
| IPR038476 all species → | Homologous_superfamily | UvrC, RNAse H endonuclease domain superfamily | Interproscan |
| IPR036876 all species → | Homologous_superfamily | UVR domain superfamily | Interproscan |
| IPR050066 all species → | Family | UvrABC system protein C | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30562 all species → | UVRC/OXIDOREDUCTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009381 all species → | Molecular Function | excinuclease ABC activity | Interproscan |
| GO:0006289 all species → | Biological Process | nucleotide-excision repair | Interproscan |
| GO:0009380 all species → | Cellular Component | excinuclease repair complex | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0006974 all species → | Biological Process | DNA damage response | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03703 | uvrC; excinuclease ABC subunit C | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
