Gene detail

Detailed information of Cxam_g12830.t1 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: KXJ70825.1, hypothetical protein RP20_CCG022393 [Aedes albopictus]
Species Cassiopea xamachana · all data for this species · gene families

Sequence

Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24152	Cyclin-dependent kinases regulatory subunit OS=Drosophila melanogaster OX=7227 GN=Cks30A PE=3 SV=1
Q25330	Cyclin-dependent kinases regulatory subunit OS=Leishmania mexicana OX=5665 PE=3 SV=1
P41384	Cyclin-dependent kinases regulatory subunit OS=Patella vulgata OX=6465 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004561 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01111 all species →	CKS	Cyclin-dependent kinase regulatory subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036858 all species →	Homologous_superfamily	Cyclin-dependent kinase, regulatory subunit superfamily	Interproscan
IPR000789 all species →	Family	Cyclin-dependent kinase, regulatory subunit	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23415 all species →	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016538 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase regulator activity	Interproscan
GO:0000307 all species →	Cellular Component	cyclin-dependent protein kinase holoenzyme complex	Interproscan
GO:0007346 all species →	Biological Process	regulation of mitotic cell cycle	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0061575 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Cxam_g12830.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Cassiopea xamachana tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Cassiopea xamachana, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →