Detailed information of Cxam_g13179.t2 in Cassiopea xamachana

Genomic Location: not available for this species
NR annotation: XP_020617337.1, nucleoporin seh1-like [Orbicella faveolata]
Species abbreviation CXAMA · all data for this species · gene families

 Sequence
Sequence data are not available for Cassiopea xamachana.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96EE3Nucleoporin SEH1 OS=Homo sapiens OX=9606 GN=SEH1L PE=1 SV=3
Q4FZW5Nucleoporin SEH1-A OS=Xenopus laevis OX=8355 GN=seh1l-a PE=1 SV=1
Q5RAN6Nucleoporin SEH1 OS=Pongo abelii OX=9601 GN=SEH1L PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005504 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR037363
all species →		FamilySec13/Seh1 familyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11024
all species →		NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005198
all species →		Molecular Functionstructural molecule activityInterproscan
GO:0031080
all species →		Cellular Componentnuclear pore outer ringInterproscan
GO:0034198
all species →		Biological Processcellular response to amino acid starvationInterproscan
GO:0035859
all species →		Cellular ComponentSeh1-associated complexInterproscan
GO:1904263
all species →		Biological Processpositive regulation of TORC1 signalingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14299SEH1; nucleoporin SEH1-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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